Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell ID: 018
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (31)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010000000000000000000
018
Head
Brain
Astrocyte
CL:0000127
2
2
Ectodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010002000000000000000
018
Head
Brain
Blood-brain barrier
Astrocyte
CL:0000127
3
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010100010000000000000
018
Head
Brain
Cerebellum
White matter
Astrocyte
CL:0000127
t161
4
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010200000000000000000
018
Head
Brain
Cerebrum
Astrocyte
CL:0000127
5
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010200010000000000000
018
Head
Brain
Cerebrum
White matter
Astrocyte
CL:0000127
6
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000000000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Astrocyte
CL:0000127
UBERON:0005392
7
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000200000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Cortical layer II (external granular layer)
Astrocyte
CL:0000127
UBERON:0005391
8
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000300000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Cortical layer III (external pyramidal layer)
Astrocyte
CL:0000127
UBERON:0005392
9
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000400000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Cortical layer IV (internal granular layer)
Astrocyte
CL:0000127
UBERON:0005393
10
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000500000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Cortical layer V (internal pyramidal layer)
Astrocyte
CL:0000127
UBERON:0005394
11
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000600000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Cortical layer VI (multiform layer)
Astrocyte
CL:0000127
UBERON:0005395
12
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000700000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Neocortex
Astrocyte
CL:0000127
13
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201030000000000000
018
Head
Brain
Cerebrum
Cerebral cortex
Temporal lobe
Astrocyte
CL:0000127
14
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010202040200000000000
018
Head
Brain
Cerebrum
Hippocampal formation
Hippocampus CA1
Stratum lacnosum moleculare
Astrocyte
CL:0000127
UBERON:0014557
15
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010202050200000000000
018
Head
Brain
Cerebrum
Hippocampal formation
Hippocampus CA2
Stratum lacnosum moleculare
Astrocyte
CL:0000127
UBERON:0014558
16
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010202060200000000000
018
Head
Brain
Cerebrum
Hippocampal formation
Hippocampus CA3
Stratum lacnosum moleculare
Astrocyte
CL:0000127
UBERON:0014559
17
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010203000000000000000
018
Head
Brain
Cerebrum
Amygdala
Astrocyte
CL:0000127
18
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000000000000000
018
Head
Brain
Cerebrum
Basal ganglia
Astrocyte
CL:0000127
19
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000100000000000
018
Head
Brain
Cerebrum
Basal ganglia
Striatum
Astrocyte
CL:0000127
20
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000101000000000
018
Head
Brain
Cerebrum
Basal ganglia
Striatum
Caudate nucleus
Astrocyte
CL:0000127
21
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000102000000000
018
Head
Brain
Cerebrum
Basal ganglia
Striatum
Putamen
Astrocyte
CL:0000127
22
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000200000000000
018
Head
Brain
Cerebrum
Basal ganglia
Subthalamic nucleus
Astrocyte
CL:0000127
23
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000300000000000
018
Head
Brain
Cerebrum
Basal ganglia
Globus pallidus
Astrocyte
CL:0000127
24
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000400000000000
018
Head
Brain
Cerebrum
Basal ganglia
Lentiform nucleus
Astrocyte
CL:0000127
25
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000500000000000
018
Head
Brain
Cerebrum
Basal ganglia
Substantia nigra
Astrocyte
CL:0000127
26
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000700000000000
018
Head
Brain
Cerebrum
Basal ganglia
Nucleus basalis of Meynert
Astrocyte
CL:0000127
27
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010204000800000000000
018
Head
Brain
Cerebrum
Basal ganglia
Claustrum
Astrocyte
CL:0000127
28
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
3150300000000000000000
018
Trunk
Spinal cord
White matter of spinal cord
Astrocyte
CL:0002606
29
2
Ectodermal
4
Terminally differentiated
4
Neurula
7110002011500000000000
018
Embryo
Neurula
Neural tube
Neural crest
Telencephalon
Astrocyte
30
2
Ectodermal
4
Terminally differentiated
4
Neurula
7110002000100000000000
018
Embryo
Neurula
Neural tube
Prosencephalon (forebrain)
Astrocyte
CL:0000127
31
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
7110002000101000000000
018
Embryo
Neurula
Neural tube
Prosencephalon (forebrain)
White matter
Astrocyte
CL:0000127
Strongylocentrotus purpuratus
cell
No.
Germ Layer Id
Differentiation State Id
Source Age Id
Anatomy Id
Cell Id
Anatomy:level 1
Anatomy:level 2
Anatomy:level 3
Anatomy:level 4-1
Anatomy:level 4-2
Anatomy:level 5-1
Anatomy:level 5-2
Anatomy:level 5-3
Anatomy:level 6
Cell Type
1
2
:Ectodermal
3
:Multipotent/Progenitor/Precursor
9
:Gastrula
1280000
018
Embryo
Gastrula
Animal plate
Non-neural progenitor
SHOGoiN Cell Conversion
Source Cell Type
Stem cell
Cell
Stem cell
Stem cell
Stem cell
Stem cell
Source Cell Name
Hematopoietic stem cell
Fibroblast
Bone marrow-derived mesenchymal stem cell
Oligodendrocyte precursor cell
Astrocyte precursor cell
Astrocyte precursor cell
Source Cell Type Id
724
120
970
909
910
910
Destination Cell Type
Cell
Cell
Cell
Cell
Cell
Cell
Destination Cell Name
Astrocyte
Astrocyte
Astrocyte
Astrocyte
Astrocyte
Astrocyte
Destination Cell Type Id
018
018
018
018
018
018
Differentiation Type
Transdifferentiation
Transdifferentiation
Differentiation
Differentiation
Differentiation
Differentiation
Reference
PMID:26004181
PMID:25556566
PMID:19127447
PMID:23395447
PMID:18820411
PMID:24140262