Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell ID: 1030005040300000000000-175
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030005040300000000000
175
Head
Eye
Eyeball
Uvea (tunica vasculosa bulbi)
Iris
Melanocyte
CL:0000148
811
,
812
,
813
,
814
,
815
,
816
,
817
,
830
,
831
,
832
,
833
,
834
,
851
,
852
,
853
,
854
,
855
,
856
Image
SHOGoiN Cell Id
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
1030005040300000000000-175
Image Id
811
812
813
814
815
816
817
830
831
832
833
834
851
852
853
854
855
856
Tissue
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Cell Type
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Melanocyte
Organism
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
Sex
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
Resolution
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
2349
1599.5
1022
1118.5
4612.5
2000
2922.5
2073
1512.5
2252.5
4342.5
1235
3215
1654.5
7872
1336.5
1764
1948.5
Nucleous Circularity
0.38315
0.309023
0.33326
0.346589
0.531963
0.381726
0.243406
0.366142
0.450342
0.32125
0.388513
0.573449
0.373986
0.484106
0.382094
0.36437
0.40734
0.475028
Nucleous Bending
3.06034
1.45205
3.19512
2.64671
3.78182
3.87037
1.63582
2.81081
1.20442
2.88627
1.02786
1.94203
3.61314
2.85876
2.55556
1.57062
2.82653
3.31937
Nucleous Convex Area
3053
2063
1283
1442
5205
2543
3866
2620
1824
2792
5071
1401
4015
2038
10443
1574
2404
2392
Nucleous Ellipse Long Axis
66.8944
89.9502
75.1003
67.1633
108.171
84.3867
130.067
70.5735
71.2129
99.3717
126.744
54.9751
86.2717
67.1817
146.605
85.8992
53.0819
57.9042
Nucleous Inertia
1.07E+06
924160
401508
413163
4.53E+06
1.09E+06
4.45E+06
889326
580197
1.58E+06
5.02E+06
306432
2.13E+06
609140
1.69E+07
672881
561911
697626
Cell Area
751.5
774.5
390
452.5
1399
1208
398.5
292
310
380.5
243
274.5
195
537
403.5
241.5
372.5
356.5
Cell Circularity
0.728694
0.782893
0.613239
0.859127
0.782579
0.792884
0.613783
0.897497
0.815562
0.73477
0.758357
0.615371
0.857541
0.75683
0.631037
0.828383
0.831904
0.871466
Cell Bending
0.49505
1.01031
1.22222
0.507042
4.24615
2.15517
0.666667
0.444444
0.533333
0.507463
0.535714
0.597015
2.69565
2.85366
1.21127
1.56863
0.539683
0.380952
Cell Convex Area
825
843
437
493
1491
1285
449
324
344
423
277
322
222
589
449
272
408
392
Cell Ellipse Long Axis
42.9319
41.8664
37.2892
26.2907
53.9231
52.55
38.1758
20.2935
24.6575
32.1521
23.0831
30.0385
17.3387
36.6379
37.5973
20.9704
27.1928
25.6817
Cell Inertia
111030
112285
38809.4
33657.8
353079
274061
40535.3
13740
16932.7
29963.4
11204
18252.9
6240.59
56940.6
40323.3
9940.93
24391.1
21766.6
Cell-nucleous Area Ratio
3.12575
2.0652
2.62051
2.47182
3.297
1.65563
7.33375
7.09932
4.87903
5.91984
17.8704
4.49909
16.4872
3.08101
19.5093
5.53416
4.73557
5.46564
Cell-nucleous Eccentricity1
0.284121
0.211102
1.06042
0.387755
0.667184
0.240716
0.167043
0.362894
0.185664
1.06308
0.573268
0.271953
0.832903
0.272718
3.55391
0.732137
0.41023
0.337647
Cell-nucleous Eccentricity2
0.149146
0.119428
0.386766
0.3272
0.409671
0.134559
0.0585729
0.330559
0.121667
0.501507
0.338354
0.105274
0.694493
0.139173
1.33095
0.515807
0.265184
0.233629
Cell-nucleous Eccentricity3
0.128965
0.206673
0.789867
0.386376
0.400398
0.222805
0.0742406
0.170633
0.11039
0.531481
0.177022
0.10951
0.244787
0.15113
0.65749
0.535693
0.159344
0.134021
Cell-nucleous Eccentricity4
0.0957199
0.0555863
0.192039
0.128081
0.20422
0.0837937
0.0171917
0.0950528
0.0421272
0.162265
0.0616222
0.057522
0.139578
0.075899
0.341324
0.125923
0.135849
0.103619