SHOGoiN Cell ID: 3110001010000000000000-020

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

Differentiated (1)
Stem (0)
Embryo (0)

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	3 Endodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	3110001010000000000000	020	Trunk	Pancreas		Endocrine pancreas	Islet of Langerhans							Alpha cell		CL:0000171		390, 391, 392	t072

SHOGoiN Cell Transcriptome

Expression Profile	GSM1901456	GSM1901466	GSM1901470	GSM1901473	GSM1901475	GSM1901480	GSM1901484	GSM1901486	GSM1901487	GSM1901488	GSM1901489	GSM1901493	GSM1901495	GSM1901497	GSM1901515	GSM1901516	GSM1901522	GSM1901524
SHOGoiN Cell Id	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020
Project Name	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive
Project Id	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464	SRP064464
Assay Id	SRP064464_T2	SRP064464_T12	SRP064464_T16	SRP064464_T18	SRP064464_T20	SRP064464_T24	SRP064464_T28	SRP064464_T30	SRP064464_T31	SRP064464_T32	SRP064464_T33	SRP064464_T37	SRP064464_T39	SRP064464_T41	SRP064464_T55	SRP064464_T56	SRP064464_T62	SRP064464_T64
Project:project Title	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes	Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypes
Project:project Description	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE73727
Project:project Submission Date	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15	5-Oct-15
Project:organization Name	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences	CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Project:stable Contact Information	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at	Christoph Bock, cbock@cemm.oeaw.ac.at
Project:reference Submission Status	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published
Project:reference Authors	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.	Li J, Klughammer J, Farlik M, Penz T et al.
Project:reference Title	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.	Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types.
Project:reference Pubmed Id	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212	26691212
Assay:assay Type	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome	Transcriptome
Assay:assay Factor	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020
Source Cell:sample Id	GSM1901456	GSM1901466	GSM1901470	GSM1901473	GSM1901475	GSM1901480	GSM1901484	GSM1901486	GSM1901487	GSM1901488	GSM1901489	GSM1901493	GSM1901495	GSM1901497	GSM1901515	GSM1901516	GSM1901522	GSM1901524
Source Cell:SHOGoiN Cell Id	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020
Source Cell:source Cell Type	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)	Alpha cell (Pancreatic islet)
Source Cell:source Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Source Cell:race Or Strain	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male	Male
Source Cell:age Or Stage	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o	37 y/o
Source Cell:source Tissue Or Organ	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22	BMI was 22
Source Cell:source Provider
Technology:assay Technology	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq	RNA-Seq
Technology:assay Detection Instrumentation	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000	HiSeq 2000
Technology:assay Detection Instrument Vendor	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina
Technology:assessed Material	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA	polyA RNA
Technology:source Cell Format
Technology:source Cell Preparation Method	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured	Single cell, cultured
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data Id	SRR2558112	SRR2558122	SRR2558126	SRR2558129	SRR2558131	SRR2558136	SRR2558140	SRR2558142	SRR2558143	SRR2558144	SRR2558145	SRR2558149	SRR2558151	SRR2558153	SRR2558171	SRR2558172	SRR2558178	SRR2558180
Data:data Type	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample	Tab-delimited text files include transcript-wise RPKM values or read counts for each sample
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Source	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19	hg19
Data:genome Annotation Ref

SHOGoiN Cell Marker

Cell Type Name	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell	Alpha cell
Cell Type Subclass
SHOGoiN Cell Id	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020
Anatomical Location	Pancreas	Pancreas	Pancreas	Pancreas	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans	Pancreas, islet of Langerhans
Marker Molecule:name	Glucagon	Glucagon	Homeobox protein CDX-2 (Cdx2/3)	Transthyretin (ATTR, Prealbumin, TBPA, TTR, PALB)	Lysyl oxidase homolog 4 (Lysyl oxidase-like protein 4, Lysyl oxidase-related protein C, LOXL4, LOXC)	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1 (Pancreas-enriched phospholipase C, Phosphoinositide phospholipase C-epsilon-1, Phospholipase C-epsilon-1, PLC-epsilon-1, PLCE1, KIA	Iroquois-class homeodomain protein IRX-2 (Homeodomain protein IRXA2, Iroquois homeobox protein 2, IRX2, IRXA2)	Glucosylceramidase (Acid beta-glucosidase, Alglucerase, Beta-glucocerebrosidase, Beta-GC, D-glucosyl-N-acylsphingosine glucohydrolase, Imiglucerase, GBA, GC, GLUC)	Kelch-like protein 41 (Kel-like protein 23, Kelch repeat and BTB domain-containing protein 10, Kelch-related protein 1, Sarcosin, KLHL41, KBTBD10, KRP1)	Beta-crystallin A2 (Beta-A2 crystallin, CRYBA2)	Transmembrane 4 L6 family member 4 (Intestine and liver tetraspan membrane protein, IL-TMP, TM4SF4, ILTMP)	Regulator of G-protein signaling 4 (RGP4, RGS4)	Protein FEV (Fifth Ewing variant protein, PC12 ETS domain-containing transcription factor 1, PC12 ETS factor 1, Pet-1, FEV, PET1)	Homeobox protein ARX (Aristaless-related homeobox, ARX)	Prostaglandin E2 receptor EP3 subtype (PGE receptor EP3 subtype, PGE2 receptor EP3 subtype, PGE2-R, Prostanoid EP3 receptor, PTGER3)	High mobility group protein B3 (High mobility group protein 2a, HMG-2a, High mobility group protein 4, HMG-4, HMGB3, HMG2A, HMG4)	DNA-binding protein RFX6 (Regulatory factor X 6, Regulatory factor X domain-containing protein 1, RFX6, RFXDC1)	Transcription factor MafB (Maf-B, V-maf musculoaponeurotic fibrosarcoma oncogene homolog B, MAFB, KRML)	Probable global transcription activator SNF2L1 (ATP-dependent helicase SMARCA1, Nucleosome-remodeling factor subunit SNF2L, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin sub	Progesterone receptor (PR, Nuclear receptor subfamily 3 group C member 3, PGR, NR3C3)	LIM domain-binding protein 2 (LDB-2, Carboxyl-terminal LIM domain-binding protein 1, CLIM-1, LIM domain-binding factor CLIM1, LDB2, CLIM1)
Marker Molecule:type	Peptide hormone	Peptide hormone	Protein	Protein	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Gene
Marker Molecule:category	Secreted	Secreted	Transcription factor										Transcription factor	Transcription factor	Transcription factor	Transcription factor	Transcription factor	Transcription factor	Transcription factor	Transcription factor	Transcription factor
Subcellular Localization	Endprasmic reticulum	Endprasmic reticulum	Nucleus	Cytosol, Secreted	Secreted	Plasma membrane, Cytosol	Nucleus	Lysosome membrane	Plasma membrane, Cytosol		Plasma membrane		Nucleus	Nucleus	Plasma membrane	Nucleus, Cytosol	Nucleus	Nucleus	Nucleus	Nucleus, Cytosol	Nucleus
Uniprot Id	P01275	P01275	Q99626	P02766	Q96JB6	Q9P212	Q9BZI1	P04062	O60662	P53672	P48230	P49798	Q99581	Q96QS3	P43115	O15347	Q8HWS3	Q9Y5Q3	P28370	P06401	O43679
Gene Id				7276	84171	51196	153572	2629	10324	1412	7104	5999	54738	170302	5733	3149	222546	9935	6594	5241	9079
Source Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Reference	PMID:27182095	PMID:16461897	PMID:22974359	PMID:26691212	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023	PMID:27693023

Image

SHOGoiN Cell Id	3110001010000000000000-020	3110001010000000000000-020	3110001010000000000000-020
Image Id	390	391	392
Tissue	Pancreas	Pancreas	Pancreas
Cell Type	Alpha cell	Alpha cell	Alpha cell
Organism	Human	Human	Human
Cell Strain
Location	Pancreas	Pancreas	Pancreas
Karyotype
Race	Japanese	Japanese	Japanese
Age	57	57	57
Sex	male	male	male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	malignant pleural mesothelioma	malignant pleural mesothelioma	malignant pleural mesothelioma
Cod
Shooting Date	2010.12.10	2010.12.10	2010.12.10
Shooting Condition	normal tissue or mild fibrosing	normal tissue or mild fibrosing	normal tissue or mild fibrosing
Embedding	paraffin	paraffin	paraffin
Staining	hematoxylin	hematoxylin	hematoxylin
Microscope	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50
Camera	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600
Image Size Y	1200	1200	1200
Resolution	72	72	72
Magnification	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan
Note
Nucleous Area
Nucleous Circularity
Nucleous Bending
Nucleous Convex Area
Nucleous Ellipse Long Axis
Nucleous Inertia
Cell Area
Cell Circularity
Cell Bending
Cell Convex Area
Cell Ellipse Long Axis
Cell Inertia
Cell-nucleous Area Ratio
Cell-nucleous Eccentricity1
Cell-nucleous Eccentricity2
Cell-nucleous Eccentricity3
Cell-nucleous Eccentricity4