SHOGoiN Cell ID: 7020007000000000000000-795
SHOGoiN Cell Taxonomy
Homo sapiens & Mus musculus cell
| No. | Germ Layer | Differentiation State | Source Age | Anatomy Id | Cell Type Id | Anatomy:body Part | Anatomy:organ | Anatomy:sub-organ | Anatomy:tissue 1 | Anatomy:tissue 2 | Anatomy:tissue 3 | Anatomy:tissue 4 | Anatomy:tissue 5-1 | Anatomy:tissue 5-2 | Anatomy:tissue 5-3 | Anatomy:tissue 5-4 | Cell Type | Synonym | CL Id | UBERON Id | Image Id | Tissue Image ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 Non-layered | 3 Multipotent/Progenitor/Precursor | 2 Blastula state (4d~7d) | 7020007000000000000000 | 795 | Embryo | Blastocyst | Trophoblast | Trophoblast cell |
SHOGoiN Cell Transcriptome
| Expression Profile | GSM1624222 | GSM1624223 | GSM1624224 | GSM1624225 | GSM1624226 | GSM1624227 | GSM1624229 | GSM1624230 | GSM1624231 | GSM1624233 | GSM1624234 | GSM1624235 | GSM1624236 | GSM1624237 | GSM1868815-1 | GSM1868815-2 | GSM1868815-3 | GSM1868815-4 | GSM1868815-5 | GSM1868816-1 | GSM1868816-2 | GSM1868816-3 | GSM1868816-4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SHOGoiN Cell Id | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 |
| Project Name | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive | Sequence Read Archive |
| Project Id | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 | SRP055810 |
| Assay Id | SRP055810_T1 | SRP055810_T2 | SRP055810_T3 | SRP055810_T4 | SRP055810_T5 | SRP055810_T6 | SRP055810_T8 | SRP055810_T9 | SRP055810_T10 | SRP055810_T12 | SRP055810_T13 | SRP055810_T14 | SRP055810_T15 | SRP055810_T16 | SRP055810_T43 | SRP055810_T44 | SRP055810_T45 | SRP055810_T46 | SRP055810_T47 | SRP055810_T48 | SRP055810_T49 | SRP055810_T50 | SRP055810_T51 |
| Project:project Title | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst | Single-Cell RNA-seq Defines the Three Cell Lineages of the Human Blastocyst |
| Project:project Description | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66507 |
| Project:project Submission Date | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 | 4-Mar-15 |
| Project:organization Name | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute | Crick Institute |
| Project:stable Contact Information | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com | Paul Blakeley, blakeleyp@gmail.com |
| Project:reference Submission Status | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published | Published |
| Project:reference Authors | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. | Blakeley P, Fogarty NM, Del Valle I, Wamaitha SE et al. |
| Project:reference Title | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. |
| Project:reference Pubmed Id | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 | 26293300 |
| Assay:assay Type | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome | Transcriptome |
| Assay:assay Factor | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 |
| Source Cell:sample Id | GSM1624222 | GSM1624223 | GSM1624224 | GSM1624225 | GSM1624226 | GSM1624227 | GSM1624229 | GSM1624230 | GSM1624231 | GSM1624233 | GSM1624234 | GSM1624235 | GSM1624236 | GSM1624237 | GSM1868815-1 | GSM1868815-2 | GSM1868815-3 | GSM1868815-4 | GSM1868815-5 | GSM1868816-1 | GSM1868816-2 | GSM1868816-3 | GSM1868816-4 |
| Source Cell:SHOGoiN Cell Id | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 |
| Source Cell:source Cell Type | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm | Trophectoderm |
| Source Cell:source Organism | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human |
| Source Cell:race Or Strain | |||||||||||||||||||||||
| Source Cell:age Or Stage | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) | Blastocyst (6-7 days post fertilisation) |
| Source Cell:source Tissue Or Organ | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue | Early embryonic tissue |
| Source Cell:source Cell Karyotype | |||||||||||||||||||||||
| Source Cell:cell Lineage | |||||||||||||||||||||||
| Source Cell:organism Genetic Information | |||||||||||||||||||||||
| Source Cell:health Status | |||||||||||||||||||||||
| Source Cell:source Provider | |||||||||||||||||||||||
| Technology:assay Technology | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq | RNA-Seq |
| Technology:assay Detection Instrumentation | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 | HiSeq 2000 |
| Technology:assay Detection Instrument Vendor | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina | Illumina |
| Technology:assessed Material | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA | polyA RNA |
| Technology:source Cell Format | |||||||||||||||||||||||
| Technology:source Cell Preparation Method | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated | Single cell, dissociated |
| Technology:source Cell Identidication Method | |||||||||||||||||||||||
| Technology:source Cell Treatment | |||||||||||||||||||||||
| Data:data Id | SRR1825955 | SRR1825956 | SRR1825957 | SRR1825958 | SRR1825959 | SRR1825960 | SRR1825962 | SRR1825963 | SRR1825964 | SRR1825966 | SRR1825967 | SRR1825968 | SRR1825969 | SRR1825970 | SRR2240604 | SRR2240605 | SRR2240606 | SRR2240607 | SRR2240608 | SRR2240609 | SRR2240610 | SRR2240611 | SRR2240612 |
| Data:data Type | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence | Sequence |
| Data:data Processing Method | |||||||||||||||||||||||
| Data:data Processing Software And Version | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count | TopHat2, HTSeq-count |
| Data:data Normalization Method | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM | RPKM |
| Data:data Normalization Software Name And Version | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq | DESeq |
| Data:data Analytical Software And Version | |||||||||||||||||||||||
| Data:reference Sequence Source | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 | GRCh37.74 |
| Data:genome Annotation Ref |
SHOGoiN Cell Marker
| Cell Type Name | Blastocyst cell | Blastocyst cell | Blastocyst cell |
|---|---|---|---|
| Cell Type Subclass | Trophoblast cell | Trophoblast cell | Trophoblast cell |
| SHOGoiN Cell Id | 7020007000000000000000-795 | 7020007000000000000000-795 | 7020007000000000000000-795 |
| Anatomical Location | Germ layer | Germ layer | Germ layer |
| Marker Molecule:name | Homeobox protein CDX-2 (CDX-3, Caudal-type homeobox protein 2, CDX2, CDX3) | Keratin, type II cytoskeletal 7(Cytokeratin-7, CK-, Keratin-7, K7, Sarcolectin, Type-II keratin Kb7, KRT7, SCL) | Tumor-associated calcium signal transducer 2 (Cell surface glycoprotein Trop-2, Membrane component chromosome 1 surface marker 1, Pancreatic carcinoma marker protein GA733-1, TACSTD2, GA733-1, M1S1, |
| Marker Molecule:type | Protein | Protein | Protein |
| Marker Molecule:category | Transcription factor | ||
| Subcellular Localization | Nucleus | Cytosol | Plasma membrane |
| Uniprot Id | Q99626 | P08729 | P09758 |
| Gene Id | |||
| Source Organism | Human | Human | Human |
| Reference | https://www.rndsystems.com/research-area/trophoblast-stem-cell-markers | PMID:11170831 | https://www.rndsystems.com/research-area/trophoblast-stem-cell-markers |