SHOGoiN Cell ID: 7180101000000000000000-755

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

No.Germ LayerDifferentiation StateSource AgeAnatomy IdCell Type IdAnatomy:body PartAnatomy:organAnatomy:sub-organAnatomy:tissue 1Anatomy:tissue 2Anatomy:tissue 3Anatomy:tissue 4Anatomy:tissue 5-1Anatomy:tissue 5-2Anatomy:tissue 5-3Anatomy:tissue 5-4Cell TypeSynonymCL IdUBERON IdImage IdTissue Image ID
11 Non-layered3 Multipotent/Progenitor/Precursor6 Fetus state ~7180101000000000000000755EmbryoDevelopmental gonadOvaryPrimordial folliclePrimary oocyteCL:0000654

SHOGoiN Cell Methylome

Methylation Profile

GSM1849308

GSM1849309

GSM1849312

GSM1849315

GSM1849316

GSM1849318

GSM1849319

GSM1849320

GSM2042047

GSM2042050

GSM2481553

GSM2481568

GSM2481569

GSM2481582

GSM2481583

GSM2481584

GSM2481585

GSM2986306

SHOGoiN Cell Id7180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-755
Project NameSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read ArchiveSequence Read Archive
Project IdSRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP062328SRP074598SRP074598SRP074598SRP074598SRP074598SRP074598SRP074598SRP074598
Assay IdSRP062328_M4SRP062328_M5SRP062328_M8SRP062328_M11SRP062328_M12SRP062328_M14SRP062328_M15SRP062328_M16SRP062328_M20SRP062328_M23SRP074598_M26SRP074598_M41SRP074598_M42SRP074598_M55SRP074598_M56SRP074598_M57SRP074598_M58SRP074598_M555
Project:project TitleHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeHuman oocyte DNA methylomeSingle-cell DNA methylome sequencing of human preimplantation embryosSingle-cell DNA methylome sequencing of human preimplantation embryosSingle-cell DNA methylome sequencing of human preimplantation embryosSingle-cell DNA methylome sequencing of human preimplantation embryosSingle-cell DNA methylome sequencing of human preimplantation embryosSingle-cell DNA methylome sequencing of human preimplantation embryosSingle-cell DNA methylome sequencing of human preimplantation embryosSingle-cell DNA methylome sequencing of human preimplantation embryos
Project:project Descriptionhttps://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71985https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233
Project:project Submission Date12-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-1512-Aug-159-May-169-May-169-May-169-May-169-May-169-May-169-May-169-May-16
Project:organization NameAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineAlbert Einstein College of MedicineMGH cancer centerMGH cancer centerMGH cancer centerMGH cancer centerMGH cancer centerMGH cancer centerMGH cancer centerMGH cancer center
Project:stable Contact InformationBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comBo Yu, boyumich2@gmail.comHongshan Guo, hguo4@mgh.harvard.eduHongshan Guo, hguo4@mgh.harvard.eduHongshan Guo, hguo4@mgh.harvard.eduHongshan Guo, hguo4@mgh.harvard.eduHongshan Guo, hguo4@mgh.harvard.eduHongshan Guo, hguo4@mgh.harvard.eduHongshan Guo, hguo4@mgh.harvard.eduHongshan Guo, hguo4@mgh.harvard.edu
Project:reference Submission StatusPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublishedPublished
Project:reference AuthorsYu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Yu B, Dong X, Gravina S, Kartal _ et al.Zhu P, Guo H, Ren Y, Hou Y et al. Zhu P, Guo H, Ren Y, Hou Y et al. Zhu P, Guo H, Ren Y, Hou Y et al. Zhu P, Guo H, Ren Y, Hou Y et al. Zhu P, Guo H, Ren Y, Hou Y et al. Zhu P, Guo H, Ren Y, Hou Y et al. Zhu P, Guo H, Ren Y, Hou Y et al. Zhu P, Guo H, Ren Y, Hou Y et al.
Project:reference TitleGenome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation.Single-cell DNA methylome sequencing of human preimplantation embryos.Single-cell DNA methylome sequencing of human preimplantation embryos.Single-cell DNA methylome sequencing of human preimplantation embryos.Single-cell DNA methylome sequencing of human preimplantation embryos.Single-cell DNA methylome sequencing of human preimplantation embryos.Single-cell DNA methylome sequencing of human preimplantation embryos.Single-cell DNA methylome sequencing of human preimplantation embryos.Single-cell DNA methylome sequencing of human preimplantation embryos.
Project:reference Pubmed Id286488982864889828648898286488982864889828648898286488982864889828648898286488982925525829255258292552582925525829255258292552582925525829255258
Assay:assay TypeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylomeMethylome
Assay:assay FactorOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturationOocyte maturation
Source Cell:sample IdGSM1849308GSM1849309GSM1849312GSM1849315GSM1849316GSM1849318GSM1849319GSM1849320GSM2042047GSM2042050GSM2481553GSM2481568GSM2481569GSM2481582GSM2481583GSM2481584GSM2481585GSM2986306
Source Cell:SHOGoiN Cell Id7180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-7557180101000000000000000-755
Source Cell:source Cell TypeOocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )Oocyte (germinal vesicle (GV) stage )GV oocyteGV oocyteGV oocyteGV oocyteGV oocyteGV oocyteGV oocyteGV oocyte
Source Cell:source OrganismHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHumanHuman
Source Cell:race Or StrainFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemaleFemale
Source Cell:age Or Stage
Source Cell:source Tissue Or OrganGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitaliaGenitalia
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay TechnologyBisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (WGBS)Bisulfite-Seq (PBAT)Bisulfite-Seq (PBAT)Bisulfite-Seq (PBAT)Bisulfite-Seq (PBAT)Bisulfite-Seq (PBAT)Bisulfite-Seq (PBAT)Bisulfite-Seq (PBAT)Bisulfite-Seq (PBAT)
Technology:assay Detection InstrumentationHiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2000HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500HiSeq 2500
Technology:assay Detection Instrument VendorIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIlluminaIllumina
Technology:assesed MaterialGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNAGenomic DNA
Technology:source Cell FormatSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle cellSingle-cellSingle-cellSingle-cellSingle-cellSingle-cellSingle-cellSingle-cellSingle-cell
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data IdSRR2156467SRR2156468SRR2156471SRR2156474SRR2156475SRR2156477SRR2156478SRR2156479SRR3106761SRR3106764SRR5241090SRR5241105SRR5241106SRR5241119SRR5241120SRR5241121SRR5241122SRR6689587
Data:data TypeSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequenceSequence
Data:data Processing Method
Data:data Processing Software And VersionBismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark21 v0.10.1Bismark (version: 0.7.6)Bismark (version: 0.7.6)Bismark (version: 0.7.6)Bismark (version: 0.7.6)Bismark (version: 0.7.6)Bismark (version: 0.7.6)Bismark (version: 0.7.6)Bismark (version: 0.7.6)
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Sourcehg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19hg19, mm9
Data:genome Annotation Ref