Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell ID: 8010000000000000000000-002
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
4
Mesodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
8010000000000000000000
002
Immune system class
Blood
Basophil
CL:0000767
403
SHOGoiN Cell Marker
Cell Type Name
Immune system/blood cell
Cell Type Subclass
Basophil
SHOGoiN Cell Id
8010000000000000000000-002
Anatomical Location
Bone marrow
Marker Molecule:name
Interleukin-3 receptor subunit alpha (IL-3R alpha, CD123)
Marker Molecule:type
Protein
Marker Molecule:category
CD molecule
Subcellular Localization
Plasma membrane
Uniprot Id
P26951
Gene Id
Source Organism
Human
Reference
http://www.miltenyibiotec.com/en/products-and-services/macs-cell-separation/cell-separation-reagents/dendritic-cells/cd123-microbeads-human.aspx
Image
SHOGoiN Cell Id
8010000000000000000000-002
Image Id
403
Tissue
Immune system (blood)
Cell Type
Basophil
Organism
Human
Cell Strain
Location
Large intestine
Karyotype
Race
Japanese
Age
68
Sex
male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
appendicitis
Cod
Shooting Date
2011.4.8
Shooting Condition
normal or mild epithelium hyperplasia
Embedding
paraffin
Staining
hematoxylin
Microscope
OLYMPUS BX50
Camera
OLYMPUS DP20
Image Size X
1600
Image Size Y
1200
Resolution
72
Magnification
400
Contact Person
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Note
Nucleous Area
149.5
Nucleous Circularity
0.813985
Nucleous Bending
2
Nucleous Convex Area
177
Nucleous Ellipse Long Axis
14.682
Nucleous Inertia
3668.41
Cell Area
456.5
Cell Circularity
0.603483
Cell Bending
2.6988
Cell Convex Area
Cell Ellipse Long Axis
28.0395
Cell Inertia
36427
Cell-nucleous Area Ratio
0.327492
Cell-nucleous Eccentricity1
0.0922465
Cell-nucleous Eccentricity2
0.0713279
Cell-nucleous Eccentricity3
0.152032
Cell-nucleous Eccentricity4
0.136221