Human Omics database for
the Generation of iPS and Normal Cells
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Statistics
Document manuals
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell ID: 8010000000000000000000-004
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
4
Mesodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
8010000000000000000000
004
Immune system class
Blood
Leukocyte
CL:0000738
SHOGoiN Cell Transcriptome
Expression Profile
GSM967506
GSM967507
SHOGoiN Cell Id
8010000000000000000000-004
8010000000000000000000-004
Project Name
Sequence Read Archive
Sequence Read Archive
Project Id
SRP014428
SRP014428
Assay Id
SRP014428_T9
SRP014428_T10
Project:project Title
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Project:project Description
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495
Project:project Submission Date
22-Jul-12
22-Jul-12
Project:organization Name
Karolinska Institutet
Karolinska Institutet
Project:stable Contact Information
Daniel Ramsk_ld, daniel.ramskold@licr.ki.se
Daniel Ramsk_ld, daniel.ramskold@licr.ki.se
Project:reference Submission Status
Published
Published
Project:reference Authors
Ramsk_ld D, Luo S, Wang YC, Li R et al.
Ramsk_ld D, Luo S, Wang YC, Li R et al.
Project:reference Title
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Project:reference Pubmed Id
22820318
22820318
Assay:assay Type
Transcriptome
Transcriptome
Assay:assay Factor
8010000000000000000000-004
8010000000000000000000-004
Source Cell:sample Id
GSM967506
GSM967507
Source Cell:SHOGoiN Cell Id
8010000000000000000000-004
8010000000000000000000-004
Source Cell:source Cell Type
Leucocyte
Leucocyte
Source Cell:source Organism
Human
Human
Source Cell:race Or Strain
Source Cell:age Or Stage
Source Cell:source Tissue Or Organ
Blood
Blood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay Technology
RNA-seq
RNA-seq
Technology:assay Detection Instrumentation
MiSeq
MiSeq
Technology:assay Detection Instrument Vendor
Illumina
Illumina
Technology:assessed Material
polyA RNA
polyA RNA
Technology:source Cell Format
Technology:source Cell Preparation Method
Single cell, cultured
Single cell, cultured
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data Id
SRR522079
SRR522080
Data:data Type
Sequence
Sequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method
RPKM
RPKM
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
rpkmforgenes.py
rpkmforgenes.py
Data:reference Sequence Source
hg19
hg19
Data:genome Annotation Ref
SHOGoiN Cell Marker
Cell Type Name
Immune system/blood cell
Cell Type Subclass
Leukocyte
SHOGoiN Cell Id
8010000000000000000000-004
Anatomical Location
Blood
Marker Molecule:name
Receptor-type tyrosine-protein phosphatase C (Leukocyte common antigen, L-CA, T200, CD45, PTPRC)
Marker Molecule:type
Protein
Marker Molecule:category
CD molecule
Subcellular Localization
Plasma membrane
Uniprot Id
P08575
Gene Id
Source Organism
Human
Reference
https://www.beckmancoulter.com/wsrportal/page/itemDetails?itemNumber=6603838#2/10//0/25/1/0/asc/2/6603838///0/1//0/