SHOGoiN Cell ID: 8010000000000000000000-004

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

Differentiated (1)
Stem (0)
Embryo (0)

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	004	Immune system class	Blood										Leukocyte		CL:0000738

SHOGoiN Cell Transcriptome

Expression Profile	GSM967506	GSM967507
SHOGoiN Cell Id	8010000000000000000000-004	8010000000000000000000-004
Project Name	Sequence Read Archive	Sequence Read Archive
Project Id	SRP014428	SRP014428
Assay Id	SRP014428_T9	SRP014428_T10
Project:project Title	Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells	Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Project:project Description	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495
Project:project Submission Date	22-Jul-12	22-Jul-12
Project:organization Name	Karolinska Institutet	Karolinska Institutet
Project:stable Contact Information	Daniel Ramsk_ld, daniel.ramskold@licr.ki.se	Daniel Ramsk_ld, daniel.ramskold@licr.ki.se
Project:reference Submission Status	Published	Published
Project:reference Authors	Ramsk_ld D, Luo S, Wang YC, Li R et al.	Ramsk_ld D, Luo S, Wang YC, Li R et al.
Project:reference Title	Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.	Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Project:reference Pubmed Id	22820318	22820318
Assay:assay Type	Transcriptome	Transcriptome
Assay:assay Factor	8010000000000000000000-004	8010000000000000000000-004
Source Cell:sample Id	GSM967506	GSM967507
Source Cell:SHOGoiN Cell Id	8010000000000000000000-004	8010000000000000000000-004
Source Cell:source Cell Type	Leucocyte	Leucocyte
Source Cell:source Organism	Human	Human
Source Cell:race Or Strain
Source Cell:age Or Stage
Source Cell:source Tissue Or Organ	Blood	Blood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay Technology	RNA-seq	RNA-seq
Technology:assay Detection Instrumentation	MiSeq	MiSeq
Technology:assay Detection Instrument Vendor	Illumina	Illumina
Technology:assessed Material	polyA RNA	polyA RNA
Technology:source Cell Format
Technology:source Cell Preparation Method	Single cell, cultured	Single cell, cultured
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data Id	SRR522079	SRR522080
Data:data Type	Sequence	Sequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method	RPKM	RPKM
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version	rpkmforgenes.py	rpkmforgenes.py
Data:reference Sequence Source	hg19	hg19
Data:genome Annotation Ref

SHOGoiN Cell Marker

Cell Type Name	Immune system/blood cell
Cell Type Subclass	Leukocyte
SHOGoiN Cell Id	8010000000000000000000-004
Anatomical Location	Blood
Marker Molecule:name	Receptor-type tyrosine-protein phosphatase C (Leukocyte common antigen, L-CA, T200, CD45, PTPRC)
Marker Molecule:type	Protein
Marker Molecule:category	CD molecule
Subcellular Localization	Plasma membrane
Uniprot Id	P08575
Gene Id
Source Organism	Human
Reference	https://www.beckmancoulter.com/wsrportal/page/itemDetails?itemNumber=6603838#2/10//0/25/1/0/asc/2/6603838///0/1//0/