SHOGoiN Cell ID: 8010000000000000000000

SHOGoiN Cell Taxonomy

Homo sapiens & Mus musculus cell

Differentiated (49)
Stem (9)
Embryo (0)

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Cell Type	CL Id	Image Id
1	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	001	Immune system class	Blood	B cell	CL:0000236	40
2	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	027	Immune system class	Blood	Memory B cell	CL:0000787
3	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	286	Immune system class	Blood	Activated B cell
4	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	287	Immune system class	Blood	Naive B cell	CL:0000788
5	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	002	Immune system class	Blood	Basophil	CL:0000767	403
6	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	003	Immune system class	Blood	Eosinophil	CL:0000771	58, 79, 436, 437, 453, 511, 526, 541, 548, 554, 558, 568, 597, 598, 607, 646, 656, 657, 661, 662, 694
7	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	004	Immune system class	Blood	Leukocyte	CL:0000738
8	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	005	Immune system class	Blood	Lymphocyte	CL:0000542	37, 53, 78, 157, 158, 159, 160, 161, 402, 414, 426, 456, 457, 499, 509, 510, 517, 527, 533, 599, 600, 601
9	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	006	Immune system class	Blood	Macrophage	CL:0000235	51, 137, 171, 311, 312, 313, 625, 626, 627, 659, 660
10	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	007	Immune system class	Blood	M1 macrophage	CL:0000863
11	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	008	Immune system class	Blood	M2 macrophage	CL:0000890
12	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	010	Immune system class	Blood	Mast cell	CL:0000097	32, 488, 489
13	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	011	Immune system class	Blood	Monocyte	CL:0000576
14	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	288	Immune system class	Blood	CD16+ monocyte	CL:0002397
15	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	012	Immune system class	Blood	Neutrophil	CL:0000775	31, 60, 980, 981
16	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	013	Immune system class	Blood	Plasma cell	CL:0000786	6, 17, 20, 52, 67, 74, 80, 174, 410, 420, 421, 431, 432, 438, 439, 454, 455, 480, 521, 522, 530, 534, 538, 547, 549, 551, 557, 562, 565, 566, 570, 587, 590, 596, 603, 608, 609, 610, 621, 622, 623, 628
17	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	014	Immune system class	Blood	Red blood cell (erythrocyte)	CL:0000232	56, 571, 584, 982, 983, 984, 985
18	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	015	Immune system class	Blood	T cell	CL:0000084
19	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	283	Immune system class	Blood	Activated CD4+ T cell	CL:0000896
20	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	284	Immune system class	Blood	Activated CD8+ T cell	CL:0000906
21	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	016	Immune system class	Blood	T helper cell	CL:0000912
22	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	280	Immune system class	Blood	Naive T cell (Th0 cell)	CL:0000898
23	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	281	Immune system class	Blood	Na_ve CD4+ T cell	CL:0000895
24	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	282	Immune system class	Blood	Na_ve CD8+ T cell
25	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	263	Immune system class	Blood	T helper1 (Th1) cell	CL:0000545
26	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	264	Immune system class	Blood	T helper2 (Th2) cell	CL:0000546
27	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	265	Immune system class	Blood	T helper3 (Th3) cell
28	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	266	Immune system class	Blood	T helper9 (Th9) cell	CL:0002061
29	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	267	Immune system class	Blood	T helper17 (Th17) cell	CL:0000899
30	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	268	Immune system class	Blood	T helper22 (Th22) cell	CL:0001042
31	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	269	Immune system class	Blood	Follicular helper (Tfh) T cell	CL_0002038
32	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	270	Immune system class	Blood	Memory T cell	CL:0000813
33	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	271	Immune system class	Blood	Central CD4+ memory T (Tcm) cell	CL:0000904
34	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	272	Immune system class	Blood	Central CD8+ memory T (Tcm) cell	CL:0000907
35	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	273	Immune system class	Blood	Effector CD4+ memory T (Tem) cell	CL:0000905
36	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	274	Immune system class	Blood	Effector CD8+ memory T (Tem) cell	CL:0000913
37	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	275	Immune system class	Blood	Resident memory T (Trm) cell
38	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	276	Immune system class	Blood	Regulatory T (Treg) cell	CL:0000815
39	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	277	Immune system class	Blood	CD8+ cytotoxic T lymphocyte	CL:0000794
40	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	278	Immune system class	Blood	Gamma delta T cell	CL:0000798
41	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	279	Immune system class	Blood	Natural killer T (NKT) cell	CL:0000814
42	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	031	Immune system class	Blood	Platelet (thrombocyte)	CL:0000233
43	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	032	Immune system class	Blood	Myeloid dendritic cell	CL:0001057
44	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	009	Immune system class	Blood	Activated myeloid dendritic cell
45	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	040	Immune system class	Blood	Plasmacytoid dendritic cell	CL:0001058
46	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	261	Immune system class	Blood	Natural killer cell	CL:0000623
47	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	050	Immune system class	Blood	Granulocyte	CL:0000094
48	4 Mesodermal	4 Terminally differentiated	4 Neurula ~	8010000000000000000000	786	Immune system class	Blood	Immature B cell (Early B cell)	CL:0000816
49	4 Mesodermal	4 Terminally differentiated	6 Fetus 7 Postnatal 8 Neonatal 9 Infant 10 Juvenile 11 Adult	8010000000000000000000	030	Immune system class	Blood	Megakaryocyte	CL:0000556

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Cell Type	CL Id
1	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	711	Immune system class	Blood	CFU-GM	CL:0000557
2	4 Mesodermal	3 Multipotent/Progenitor/Precursor	6 Fetus state ~	8010000000000000000000	724	Immune system class	Blood	Hematopoietic stem cell	CL:0000037
3	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	732	Immune system class	Blood	Megakaryoblast
4	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	757	Immune system class	Blood	Proerythroblast	CL:0000547
5	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	768	Immune system class	Blood	Hematopoietic precursor cell	CL:0008001
6	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	783	Immune system class	Blood	Myeloblast (CFU-G)	CL:0000835
7	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	787	Immune system class	Blood	Intermediate B cell (transitional stage B cell)	CL:0000818
8	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	854	Immune system class	Blood	Pre conventional dendritic cell	CL:0002010
9	4 Mesodermal	3 Multipotent/Progenitor/Precursor	4 Neurula state ~	8010000000000000000000	856	Immune system class	Blood	Pre-pro B cell	CL:0000826

SHOGoiN Cell Transcriptome

Expression Profile	GSM1080212
SHOGoiN Cell Id	8010000000000000000000
Project Name	Sequence Read Archive
Project Id	SRP018525
Assay Id	SRP018525_T15
Project:project Title	Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing
Project:project Description	http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44183
Project:project Submission Date	19-Jul-13
Project:organization Name	Human Genetics, UCLA
Project:stable Contact Information	Kevin Huang
Project:reference Submission Status	Published
Project:reference Authors	Xue Z, Huang K, Cai C, Cai L et al.
Project:reference Title	Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing.
Project:reference Pubmed Id	23892778
Assay:assay Type	Transcriptome
Assay:assay Factor	8010000000000000000000
Source Cell:sample Id	GSM1080212
Source Cell:SHOGoiN Cell Id	8010000000000000000000
Source Cell:source Cell Type	Blood cell
Source Cell:source Organism	Human
Source Cell:race Or Strain	Han Chinase
Source Cell:age Or Stage
Source Cell:source Tissue Or Organ	Blood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Provider
Technology:assay Technology	RNA-seq
Technology:assay Detection Instrumentation	HiSeq 2000
Technology:assay Detection Instrument Vendor	Illumina
Technology:assessed Material	polyA RNA
Technology:source Cell Format
Technology:source Cell Preparation Method	Single cell, dissociated
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data Id	SRR689250
Data:data Type	Sequence
Data:data Processing Method
Data:data Processing Software And Version
Data:data Normalization Method	RPKM
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Source	hg19
Data:genome Annotation Ref

SHOGoiN Cell Methylome

Methylation Profile	GSM2773873-1	GSM2773873-2	GSM2773873-3	GSM2773873-4	GSM2773873-5	GSM2773873-6	GSM2773873-7	GSM2773874-1	GSM2773874-2	GSM2773874-3	GSM2773874-4	GSM2773874-5	GSM2773874-6	GSM2773874-7	GSM2986431
SHOGoiN Cell Id	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000
Project Name	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive	Sequence Read Archive
Project Id	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598	SRP074598
Assay Id	SRP074598_M500	SRP074598_M501	SRP074598_M502	SRP074598_M503	SRP074598_M504	SRP074598_M505	SRP074598_M506	SRP074598_M507	SRP074598_M508	SRP074598_M509	SRP074598_M510	SRP074598_M511	SRP074598_M512	SRP074598_M513	SRP074598_M665
Project:project Title	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos	Single-cell DNA methylome sequencing of human preimplantation embryos
Project:project Description	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233	https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81233
Project:project Submission Date	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16	9-May-16
Project:organization Name	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center	MGH cancer center
Project:stable Contact Information	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu	Hongshan Guo, hguo4@mgh.harvard.edu
Project:reference Submission Status	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published	Published
Project:reference Authors	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.	Zhu P, Guo H, Ren Y, Hou Y et al.
Project:reference Title	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.	Single-cell DNA methylome sequencing of human preimplantation embryos.
Project:reference Pubmed Id	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258	29255258
Assay:assay Type	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome	Methylome
Assay:assay Factor
Source Cell:sample Id	GSM2773873-1	GSM2773873-2	GSM2773873-3	GSM2773873-4	GSM2773873-5	GSM2773873-6	GSM2773873-7	GSM2773874-1	GSM2773874-2	GSM2773874-3	GSM2773874-4	GSM2773874-5	GSM2773874-6	GSM2773874-7	GSM2986431
Source Cell:SHOGoiN Cell Id	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000	8010000000000000000000
Source Cell:source Cell Type	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood
Source Cell:source Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Source Cell:race Or Strain	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	NA
Source Cell:age Or Stage
Source Cell:source Tissue Or Organ	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood	Peripheral blood
Source Cell:source Cell Karyotype
Source Cell:cell Lineage
Source Cell:organism Genetic Information
Source Cell:health Status
Source Cell:source Providor
Technology:assay Technology	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)	Bisulfite-Seq (PBAT)
Technology:assay Detection Instrumentation	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500	HiSeq 2500
Technology:assay Detection Instrument Vendor	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina	Illumina
Technology:assesed Material	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA	Genomic DNA
Technology:source Cell Format	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells	Bulk cells
Technology:source Cell Preparation Method
Technology:source Cell Identidication Method
Technology:source Cell Treatment
Data:data Id	SRR6010692	SRR6010693	SRR6010694	SRR6010695	SRR6010696	SRR6010697	SRR6010698	SRR6010699	SRR6010700	SRR6010701	SRR6010702	SRR6010703	SRR6010704	SRR6010705	SRR6689703
Data:data Type	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence	Sequence
Data:data Processing Method
Data:data Processing Software And Version	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)	Bismark (version: 0.7.6)
Data:data Normalization Method
Data:data Normalization Software Name And Version
Data:data Analytical Software And Version
Data:reference Sequence Source	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9	hg19, mm9
Data:genome Annotation Ref