Image : Cell Image ID 313

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

8010000000000000000000-006

313

Immune system (blood):Macrophage:Human

Location	Large intestine
Age	49
Sex	male
Race	Japanese
Disease	carcinoid of rectum
Cause Of Death	-
Date	2010.12.10
Condition	normal tissue or mild epithelial hyperplasia

Embedding Mehtod
Staining Mehtod	Hematoxylin
Microscope	OLYMPUS DX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	6519.5	406.5	Area ratio	0.0623514
Circularity	0.501874	0.853672	Eccentricity1	0.234599
Convex area	7382	449	Eccentricity2	0.223788
Bending energy	3.41003	1.34328	Eccentricity3	0.984436
Elliptic long axis	93.8386	24.3847	Eccentricity3	0.984436
Inertia moment	6978950	26829.4	Eccentricity4	0.861196

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	4 Mesodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	8010000000000000000000	006	Immune system class	Blood										Macrophage		CL:0000235		51, 137, 171, 311, 312, 313, 625, 626, 627, 659, 660

SHOGoiN Cell Marker

Cell Type Name	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell
Cell Type Subclass	Macrophage	Macrophage	Macrophage
SHOGoiN Cell Id	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006
Anatomical Location	Blood	Blood	Blood
Marker Molecule:name	C-X-C chemokine receptor type 4 (CXC-R4, CXCR-4, FB22, Fusin, HM89, LCR1, Leukocyte-derived seven transmembrane domain receptor, LESTR, Lipopolysaccharide-associated protein 3, LAP-3, LPS-associated p	Stage-specific embryonic antigen 1 (SSEA1, CD15)	Leukosialin (Galactoglycoprotein, CD43)
Marker Molecule:type	Protein	Protein	Protein
Marker Molecule:category	CD molecule	CD molecule	CD molecule
Subcellular Localization	Plasma membrane	Plasma membrane	Plasma membrane
Uniprot Id	P61073		P16150
Gene Id
Source Organism	Human	Human	Human
Reference	http://www.bdbiosciences.com/documents/cd_marker_handbook.pdf		http://www.miltenyibiotec.com/en/products-and-services/macs-cell-separation/cell-separation-reagents/b-cells/cd43-microbeads-human.aspx

Image

SHOGoiN Cell Id	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006	8010000000000000000000-006
Image Id	51	137	171	311	312	313	625	626	627	659	660
Tissue	Bone	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)
Cell Type	Macrophage	Macrophage	Macrophage	Macrophage	Macrophage	Macrophage	Macrophage	Macrophage	Macrophage	Macrophage	Macrophage
Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Bone	Mammary gland	Penis	Large intestine	Large intestine	Large intestine	Immune system	Immune system	Immune system	Immune system	Immune system
Karyotype
Race		Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age		44	58	49	49	49	79	79	79	79	79
Sex		female	Male	male	male	male	Female	Female	Female	Female	Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease		breast cancer	squamous cell carcinoma	carcinoid of rectum	carcinoid of rectum	carcinoid of rectum	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer
Cod
Shooting Date	2005.8.12	2009.2.19	2009.11.25	2010.12.10	2010.12.10	2010.12.10	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01
Shooting Condition		normal tissue or mild epithelial hyperplasia	normal tissue from the resected cancerous fragment	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia
Embedding		Paraffin	Paraffin				Paraffin	Paraffin	Paraffin	Paraffin	Paraffin
Staining		Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin
Microscope		OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50
Camera		OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X		1600	1600	1600	1600	1600	1600	1600	1600	1600	1600
Image Size Y	1392	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200
Resolution	1040	72	72	72	72	72	72	72	72	72	72
Magnification		400	400	400	400	400	400	400	400	400	400
Contact Person	Takayuki Masuda	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	masudat@mail.tains.tohoku.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone		0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax		0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	980-8575	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	640.5	549	1300.5	348.5	493	406.5	4548.5	2152.5	1120.5	3152.5	565
Nucleous Circularity	0.89	0.850149	0.850611	0.513767	0.876272	0.853672	0.35617	0.555065	0.45674	0.42728	0.48451
Nucleous Bending	693	2.47368	3.47826	0.831169	1.82857	1.34328	1.5047	3.23316	4.40816	2.33716	3.60784
Nucleous Convex Area	66159	602	1380	393	539	449	5368	2423	1350	3737	728
Nucleous Ellipse Long Axis	30.7	30.4396	43.9928	35.6632	25.4626	24.3847	153.577	69.0388	42.1624	98.0194	33.4329
Nucleous Inertia	1.01	50130.6	275912	31775.6	39483	26829.4	7.36E+06	859259	207206	2.31E+06	55770.6
Cell Area	3403	5413.5	2097.5	1772	4432	6519.5	365.5	1737	755.5	465.5	393
Cell Circularity	0.78	0.623047	0.654021	0.380521	0.503661	0.501874	0.486602	0.78405	0.87229	0.752235	0.85315
Cell Bending	2.05	2.41155	2.86705	4.21212	2.50355	3.41003	0.814815	1.49296	2.69663	2.44156	1.25806
Cell Convex Area	3660	5948	2287	2282	5206	7382	419	1837	814	526	427
Cell Ellipse Long Axis	68.45	96.6378	53.1736	76.9439	81.7142	93.8386	42.7701	62.4078	35.0024	28.9788	26.6317
Cell Inertia	1.88E+06	4.98E+06	705993	823651	3289350	6978950	44171.1	562758	93770.1	37952.4	26252.9
Cell-nucleous Area Ratio	0.19	0.101413	0.620024	0.19667	0.111236	0.0623514	12.4446	1.23921	1.48312	6.77229	1.43766
Cell-nucleous Eccentricity1	0.15	0.144526	0.0595199	0.0646352	0.0765719	0.234599	4.77119	0.0280484	0.0362779	1.16008	0.0741046
Cell-nucleous Eccentricity2	0.14	0.108035	0.056419	0.025993	0.0659024	0.223788	1.24271	0.0160237	0.0285695	0.845974	0.0531026
Cell-nucleous Eccentricity3	0.37	0.453505	0.0788611	0.149357	0.215247	0.984436	1.31734	0.0248133	0.0285535	0.590992	0.0604981
Cell-nucleous Eccentricity4	0.32	0.342984	0.0681929	0.0560802	0.211493	0.861196	0.346085	0.0144846	0.0237178	0.250107	0.0423001