Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 315
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1010201000500000000000-218
315
Cerebrum:Pyramidal cell:Human
Location
Cerebrum
Age
62
Sex
male
Race
Japanese
Disease
acute cardiac infarction
Cause Of Death
-
Date
2010.12.10
Condition
normal tissue or mild epithelial hyperplasia
Embedding Mehtod
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
3782
1046
Area ratio
0.276573
Circularity
0.31368
0.824991
Eccentricity1
0.367825
Convex area
4959
1115
Eccentricity2
0.112712
Bending energy
2.59748
1.33333
Eccentricity3
0.519858
Elliptic long axis
135.428
45.4985
Eccentricity3
0.519858
Inertia moment
4909680
193570
Eccentricity4
0.335491
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000500000000000
218
Head
Brain
Cerebrum
Cerebral cortex
Cortical layer V (internal pyramidal layer)
Pyramidal cell
CL:0000598
UBERON:0005394
314
,
315
,
316
,
317
,
318
,
319
,
320
Image
SHOGoiN Cell Id
1010201000500000000000-218
1010201000500000000000-218
1010201000500000000000-218
1010201000500000000000-218
1010201000500000000000-218
1010201000500000000000-218
1010201000500000000000-218
Image Id
314
315
316
317
318
319
320
Tissue
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cell Type
Pyramidal cell
Pyramidal cell
Pyramidal cell
Pyramidal cell
Pyramidal cell
Pyramidal cell
Pyramidal cell
Organism
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
62
62
62
62
62
62
62
Sex
male
male
male
male
male
male
male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
acute cardiac infarction
acute cardiac infarction
acute cardiac infarction
acute cardiac infarction
acute cardiac infarction
acute cardiac infarction
acute cardiac infarction
Cod
Shooting Date
2010.12.10
2010.12.10
2010.12.10
2010.12.10
2010.12.10
2010.12.10
2010.12.10
Shooting Condition
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
Embedding
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
1200
1200
1200
Resolution
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
1820.5
1046
970
1106.5
839.5
1382.5
917.5
Nucleous Circularity
0.888433
0.824991
0.87209
0.880865
0.836126
0.865977
0.844983
Nucleous Bending
0.780142
1.33333
1.54
2.24299
1.07216
2.45528
0.969697
Nucleous Convex Area
1907
1115
1032
1175
903
1465
980
Nucleous Ellipse Long Axis
51.4295
45.4985
38.1356
41.0823
39.6778
46.8863
42.2579
Nucleous Inertia
534971
193570
152356
199028
120969
313665
146823
Cell Area
5428.5
3782
2566
4102.5
3130
4743
2594
Cell Circularity
0.566807
0.31368
0.604622
0.385687
0.364729
0.351634
0.34815
Cell Bending
2.43299
2.59748
3.02083
2.3131
3.02128
1.48619
1.83065
Cell Convex Area
6325
4959
2967
5711
4445
6063
3530
Cell Ellipse Long Axis
90.3527
135.428
69.3314
90.8868
97.5364
138.624
97.207
Cell Inertia
5233340
4909680
1154070
3680590
2419890
7119660
1984370
Cell-nucleous Area Ratio
0.33536
0.276573
0.37802
0.269714
0.268211
0.291482
0.353701
Cell-nucleous Eccentricity1
0.149677
0.367825
0.294743
0.13844
0.177189
0.281309
0.294519
Cell-nucleous Eccentricity2
0.1369
0.112712
0.206513
0.110576
0.086996
0.102018
0.123876
Cell-nucleous Eccentricity3
0.274336
0.519858
0.440327
0.292007
0.314236
0.375332
0.433703
Cell-nucleous Eccentricity4
0.24051
0.335491
0.375445
0.244628
0.213855
0.301626
0.284955