Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 324
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1010201000400000000000-134
324
Cerebrum:Glial cell:Human
Location
Cerebrum
Age
62
Sex
male
Race
Japanese
Disease
acute cardiac infarction
Cause Of Death
-
Date
2010.12.10
Condition
normal tissue or mild epithelial hyperplasia
Embedding Mehtod
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
1933
703
Area ratio
0.363683
Circularity
0.598381
0.850095
Eccentricity1
0.0207924
Convex area
2295
764
Eccentricity2
0.0188533
Bending energy
3.02353
1.47826
Eccentricity3
0.0390341
Elliptic long axis
53.0412
35.0602
Eccentricity3
0.0390341
Inertia moment
630969
83233.6
Eccentricity4
0.0285223
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1010201000400000000000
134
Head
Brain
Cerebrum
Cerebral cortex
Cortical layer IV (internal granular layer)
Glial cell
CL:0000125
UBERON:0005393
322
,
323
,
324
,
325
Image
SHOGoiN Cell Id
1010201000400000000000-134
1010201000400000000000-134
1010201000400000000000-134
1010201000400000000000-134
Image Id
322
323
324
325
Tissue
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Cell Type
Glial cell
Glial cell
Glial cell
Glial cell
Organism
Human
Human
Human
Human
Cell Strain
Location
Cerebrum
Cerebrum
Cerebrum
Cerebrum
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Age
62
62
62
62
Sex
male
male
male
male
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
acute cardiac infarction
acute cardiac infarction
acute cardiac infarction
acute cardiac infarction
Cod
Shooting Date
2010.12.10
2010.12.10
2010.12.10
2010.12.10
Shooting Condition
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
normal tissue or mild epithelial hyperplasia
Embedding
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
Resolution
72
72
72
72
Magnification
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Note
Nucleous Area
562.5
460.5
703
408
Nucleous Circularity
0.859835
0.900052
0.850095
0.802288
Nucleous Bending
1.79221
0.463768
1.47826
3.14286
Nucleous Convex Area
614
504
764
9999
Nucleous Ellipse Long Axis
30.8501
24.8475
35.0602
25.4547
Nucleous Inertia
52521.5
33889.6
83233.6
27507.5
Cell Area
929
1061.5
1933
1584.5
Cell Circularity
0.446588
0.491437
0.598381
0.361057
Cell Bending
3.83824
3.78102
3.02353
4.13472
Cell Convex Area
1147
1290
2295
2183
Cell Ellipse Long Axis
41.8034
39.9662
53.0412
62.0467
Cell Inertia
150749
185581
630969
513172
Cell-nucleous Area Ratio
0.60549
0.43382
0.363683
0.257494
Cell-nucleous Eccentricity1
0.106748
0.115096
0.0207924
0.174216
Cell-nucleous Eccentricity2
0.0756464
0.100085
0.0188533
0.103198
Cell-nucleous Eccentricity3
0.135515
0.169306
0.0390341
0.311711
Cell-nucleous Eccentricity4
0.102505
0.160982
0.0285223
0.25155