Image : Cell Image ID 353

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

1030003010000010000000-089

353

Eye:Epithelial cell:Human

Location	Eye
Age	30
Sex	female
Race	Japanese
Disease	lacrimal gland cyst
Cause Of Death	-
Date	2010.12.10
Condition	normal tissue

Embedding Mehtod	paraffin
Staining Mehtod	hematoxylin
Microscope	OLYMPUS BX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	2741	549	Area ratio	0.200292
Circularity	0.455206	0.882306	Eccentricity1	0.134053
Convex area	3229	600	Eccentricity2	0.085269
Bending energy	4.01724	1.10526	Eccentricity3	0.26539
Elliptic long axis	75.0932	29.0348	Eccentricity3	0.26539
Inertia moment	1423310	48994.7	Eccentricity4	0.220533

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	2 Ectodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	1030003010000010000000	089	Head	Eye		Lacrimal gland	Interlobular duct			Epithelium				Duct epithelial cell		CL:0000068		347, 348, 350, 351, 352, 353, 354	t159, t160

Image

SHOGoiN Cell Id	1030003010000010000000-089	1030003010000010000000-089	1030003010000010000000-089	1030003010000010000000-089	1030003010000010000000-089	1030003010000010000000-089	1030003010000010000000-089
Image Id	347	348	350	351	352	353	354
Tissue	Eye	Eye	Eye	Eye	Eye	Eye	Eye
Cell Type	Epithelial cell	Epithelial cell	Epithelial cell	Epithelial cell	Epithelial cell	Epithelial cell	Epithelial cell
Organism	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Eye	Eye	Eye	Eye	Eye	Eye	Eye
Karyotype
Race	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age	30	30	30	30	30	30	30
Sex	female	female	female	female	female	female	female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	lacrimal gland cyst	lacrimal gland cyst	lacrimal gland cyst	lacrimal gland cyst	lacrimal gland cyst	lacrimal gland cyst	lacrimal gland cyst
Cod
Shooting Date	2010.12.10	2010.12.10	2010.12.10	2010.12.10	2010.12.10	2010.12.10	2010.12.10
Shooting Condition	normal tissue	normal tissue	normal tissue	normal tissue	normal tissue	normal tissue	normal tissue
Embedding	paraffin	paraffin	paraffin	paraffin	paraffin	paraffin	paraffin
Staining	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin
Microscope	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50
Camera	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600	1600	1600	1600	1600
Image Size Y	1200	1200	1200	1200	1200	1200	1200
Resolution	72	72	72	72	72	72	72
Magnification	400	400	400	400	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	403.5	730.5	598.5	672.5	610	549	569.5
Nucleous Circularity	0.766094	0.714409	0.891673	0.897947	0.897323	0.882306	0.903245
Nucleous Bending	0.450704	0.368932	1.67089	0.964706	1.075	1.10526	1.03896
Nucleous Convex Area	448	795	652	724	659	600	614
Nucleous Ellipse Long Axis	31.3877	47.1854	29.1353	30.1821	29.4213	29.0348	29.8152
Nucleous Inertia	31716.2	119324	57536.4	72720.9	59767.3	48994.7	52809.3
Cell Area	1738.5	1964.5	2168	3466.5	2623	2741	2298.5
Cell Circularity	0.391087	0.348354	0.454641	0.400972	0.412335	0.455206	0.370588
Cell Bending	2.06091	2.40693	3.47619	3.67509	3.77311	4.01724	3.40586
Cell Convex Area	2126	2520	2553	4401	3228	3229	2936
Cell Ellipse Long Axis	67.8798	71.7908	68.6958	69.9232	73.0793	75.0932	63.2934
Cell Inertia	652691	811810	855067	2044730	1242220	1423310	949769
Cell-nucleous Area Ratio	0.232097	0.37185	0.276061	0.194	0.232558	0.200292	0.24777
Cell-nucleous Eccentricity1	0.165277	0.0387059	0.343286	0.13568	0.105835	0.134053	0.154795
Cell-nucleous Eccentricity2	0.0833363	0.0196991	0.205866	0.127916	0.0684188	0.085269	0.120325
Cell-nucleous Eccentricity3	0.343927	0.0711477	0.54027	0.31428	0.189219	0.26539	0.31237
Cell-nucleous Eccentricity4	0.180225	0.0299714	0.485394	0.296344	0.169945	0.220533	0.255432