Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 353
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1030003010000010000000-089
353
Eye:Epithelial cell:Human
Location
Eye
Age
30
Sex
female
Race
Japanese
Disease
lacrimal gland cyst
Cause Of Death
-
Date
2010.12.10
Condition
normal tissue
Embedding Mehtod
paraffin
Staining Mehtod
hematoxylin
Microscope
OLYMPUS BX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
2741
549
Area ratio
0.200292
Circularity
0.455206
0.882306
Eccentricity1
0.134053
Convex area
3229
600
Eccentricity2
0.085269
Bending energy
4.01724
1.10526
Eccentricity3
0.26539
Elliptic long axis
75.0932
29.0348
Eccentricity3
0.26539
Inertia moment
1423310
48994.7
Eccentricity4
0.220533
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030003010000010000000
089
Head
Eye
Lacrimal gland
Interlobular duct
Epithelium
Duct epithelial cell
CL:0000068
347
,
348
,
350
,
351
,
352
,
353
,
354
t159
,
t160
Image
SHOGoiN Cell Id
1030003010000010000000-089
1030003010000010000000-089
1030003010000010000000-089
1030003010000010000000-089
1030003010000010000000-089
1030003010000010000000-089
1030003010000010000000-089
Image Id
347
348
350
351
352
353
354
Tissue
Eye
Eye
Eye
Eye
Eye
Eye
Eye
Cell Type
Epithelial cell
Epithelial cell
Epithelial cell
Epithelial cell
Epithelial cell
Epithelial cell
Epithelial cell
Organism
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Eye
Eye
Eye
Eye
Eye
Eye
Eye
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
30
30
30
30
30
30
30
Sex
female
female
female
female
female
female
female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
lacrimal gland cyst
lacrimal gland cyst
lacrimal gland cyst
lacrimal gland cyst
lacrimal gland cyst
lacrimal gland cyst
lacrimal gland cyst
Cod
Shooting Date
2010.12.10
2010.12.10
2010.12.10
2010.12.10
2010.12.10
2010.12.10
2010.12.10
Shooting Condition
normal tissue
normal tissue
normal tissue
normal tissue
normal tissue
normal tissue
normal tissue
Embedding
paraffin
paraffin
paraffin
paraffin
paraffin
paraffin
paraffin
Staining
hematoxylin
hematoxylin
hematoxylin
hematoxylin
hematoxylin
hematoxylin
hematoxylin
Microscope
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS BX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
1200
1200
1200
Resolution
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
403.5
730.5
598.5
672.5
610
549
569.5
Nucleous Circularity
0.766094
0.714409
0.891673
0.897947
0.897323
0.882306
0.903245
Nucleous Bending
0.450704
0.368932
1.67089
0.964706
1.075
1.10526
1.03896
Nucleous Convex Area
448
795
652
724
659
600
614
Nucleous Ellipse Long Axis
31.3877
47.1854
29.1353
30.1821
29.4213
29.0348
29.8152
Nucleous Inertia
31716.2
119324
57536.4
72720.9
59767.3
48994.7
52809.3
Cell Area
1738.5
1964.5
2168
3466.5
2623
2741
2298.5
Cell Circularity
0.391087
0.348354
0.454641
0.400972
0.412335
0.455206
0.370588
Cell Bending
2.06091
2.40693
3.47619
3.67509
3.77311
4.01724
3.40586
Cell Convex Area
2126
2520
2553
4401
3228
3229
2936
Cell Ellipse Long Axis
67.8798
71.7908
68.6958
69.9232
73.0793
75.0932
63.2934
Cell Inertia
652691
811810
855067
2044730
1242220
1423310
949769
Cell-nucleous Area Ratio
0.232097
0.37185
0.276061
0.194
0.232558
0.200292
0.24777
Cell-nucleous Eccentricity1
0.165277
0.0387059
0.343286
0.13568
0.105835
0.134053
0.154795
Cell-nucleous Eccentricity2
0.0833363
0.0196991
0.205866
0.127916
0.0684188
0.085269
0.120325
Cell-nucleous Eccentricity3
0.343927
0.0711477
0.54027
0.31428
0.189219
0.26539
0.31237
Cell-nucleous Eccentricity4
0.180225
0.0299714
0.485394
0.296344
0.169945
0.220533
0.255432