Image : Cell Image ID 40
| No. | SHOGoiN cell id | Image (Image ID) | Title | Sample | Method | Contact | Morphologic Feature | Note | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| 1 | 8010000000000000000000-001 |  40 | Immune system (blood):B cell:Human |
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SHOGoiN Cell Taxonomy
Homo sapiens & Mus musculus cell
| No. | Germ Layer | Differentiation State | Source Age | Anatomy Id | Cell Type Id | Anatomy:body Part | Anatomy:organ | Anatomy:sub-organ | Anatomy:tissue 1 | Anatomy:tissue 2 | Anatomy:tissue 3 | Anatomy:tissue 4 | Anatomy:tissue 5-1 | Anatomy:tissue 5-2 | Anatomy:tissue 5-3 | Anatomy:tissue 5-4 | Cell Type | Synonym | CL Id | UBERON Id | Image Id | Tissue Image ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4 Mesodermal | 4 Terminally differentiated | 6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult | 8010000000000000000000 | 001 | Immune system class | Blood | B cell | CL:0000236 | 40 |
SHOGoiN Cell Transcriptome
| Expression Profile | SAMN02870136 | SAMN02870137 |
|---|---|---|
| SHOGoiN Cell Id | 8010000000000000000000-001 | 8010000000000000000000-001 |
| Project Name | Sequence Read Archive | Sequence Read Archive |
| Project Id | SRP043513 | SRP043513 |
| Assay Id | SRP043513_T1 | SRP043513_T2 |
| Project:project Title | Single Cell RNAseq data and PacBio amplicon sequencing data | Single Cell RNAseq data and PacBio amplicon sequencing data |
| Project:project Description | http://www.ncbi.nlm.nih.gov/sra/SRX620799[accn] | http://www.ncbi.nlm.nih.gov/sra/SRX620799[accn] |
| Project:project Submission Date | ||
| Project:organization Name | ||
| Project:stable Contact Information | ||
| Project:reference Submission Status | ||
| Project:reference Authors | ||
| Project:reference Title | ||
| Project:reference Pubmed Id | ||
| Assay:assay Type | Transcriptome | Transcriptome |
| Assay:assay Factor | 8010000000000000000000-001 | 8010000000000000000000-001 |
| Source Cell:sample Id | SAMN02870136 | SAMN02870137 |
| Source Cell:SHOGoiN Cell Id | 8010000000000000000000-001 | 8010000000000000000000-001 |
| Source Cell:source Cell Type | B cell, IgM expressing | B cell, IgA expressing |
| Source Cell:source Organism | Human | Human |
| Source Cell:race Or Strain | ||
| Source Cell:age Or Stage | ||
| Source Cell:source Tissue Or Organ | Blood | Blood |
| Source Cell:source Cell Karyotype | ||
| Source Cell:cell Lineage | ||
| Source Cell:organism Genetic Information | ||
| Source Cell:health Status | ||
| Source Cell:source Provider | Stanford Blood Center | Stanford Blood Center |
| Technology:assay Technology | RNA-seq | RNA-seq |
| Technology:assay Detection Instrumentation | HiSeq 2000 | HiSeq 2000 |
| Technology:assay Detection Instrument Vendor | Illumina | Illumina |
| Technology:assessed Material | ||
| Technology:source Cell Format | ||
| Technology:source Cell Preparation Method | Single cell | Single cell |
| Technology:source Cell Identidication Method | ||
| Technology:source Cell Treatment | ||
| Data:data Id | SRR1449122 | SRR1449123 |
| Data:data Type | Sequence | Sequence |
| Data:data Processing Method | ||
| Data:data Processing Software And Version | ||
| Data:data Normalization Method | ||
| Data:data Normalization Software Name And Version | ||
| Data:data Analytical Software And Version | ||
| Data:reference Sequence Source | ||
| Data:genome Annotation Ref |
SHOGoiN Cell Marker
| Cell Type Name | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell | Immune system/blood cell |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell Type Subclass | Activated Bcell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | Activated B Cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | B cell | Mature B Cell |
| SHOGoiN Cell Id | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 | 8010000000000000000000-001 |
| Anatomical Location | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood | Blood |
| Marker Molecule:name | Leukosialin (Galactoglycoprotein, CD43) | ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 (2'-phospho-ADP-ribosyl cyclase, 2'-phospho-cyclic-ADP-ribose transferase, ADP-ribosyl cyclase 1, ADPRC 1, cADPr hydrolase 1, T10, CD38) | Tumor necrosis factor receptor superfamily member 8 (CD30L receptor, Ki-1 antigen, Lymphocyte activation antigen CD30, TNFRSF8, D1S166E) | Early activation antigen CD69 (Activation inducer molecule, AIM, EA1, Early T-cell activation antigen p60, Leukocyte surface antigen Leu-23, MLR-3, CD69, CLEC2C) | CD70 antigen (CD27 ligand, Tumor necrosis factor ligand superfamily member 7, CD70, CD27L, CD27LG, TNFSF7 | Transferrin receptor protein 1 (TR, TfR, TfR1, Trfr, T9, p90, CD71, TFRC) | T-lymphocyte activation antigen CD80 (Activation B7-1 antigen, BB1, CD80, CD28LG, CD28LG1, LAB7) | T-lymphocyte activation antigen CD86 (Activation B7-2 antigen, B70, BU63, FUN-1, CD86, CD28LG2) | Interleukin-2 receptor subunit alpha, IL-2 receptor subunit alpha, IL-2-RA, IL-2R subunit alpha, IL2-RA (TAC antigen, p55, CD25, IL2RA) | Dipeptidyl peptidase 4 (EC:3.4.14.51 Publication) (ADABP, Adenosine deaminase complexing protein 2, Dipeptidyl peptidase IV, DPP IV, T-cell activation antigen CD26, TP103, CD26, DPP4, ADCP2) | T-cell-specific surface glycoprotein CD28 (TP44, CD28) | CD83 antigen, hCD83 (B-cell activation protein, Cell surface protein HB15, CD83) | CD166 antigen (Activated leukocyte cell adhesion molecule, CD166, ALCAM, MEMD) | Tumor necrosis factor ligand superfamily member 4 (Glycoprotein Gp34, OX40 ligand, OX40L, CD252, TNFSF4, TXGP1) | Tumor necrosis factor ligand superfamily member 10 (Apo-2 ligand, TNF-related apoptosis-inducing ligand, Protein TRAIL, CD253, TNFSF10, APO2L, TRAIL) | Tumor necrosis factor receptor superfamily member 13C (B-cell-activating factor receptor, BAFF receptor, BLyS receptor 3, CD268, TNFRSF13C, BAFFR, BR3) | ICOS ligand (B7 homolog 2, B7-like protein Gl50, B7-related protein 1, B7RP-1, CD275, ICOSLG, B7H2, B7RP1, ICOSL, KIAA0653) | Programmed cell death protein 1(Protein PD-1, hPD-1, CD279, PDCD1, PD1) | Toll-like receptor 9 (CD289, TLR9) | Fc receptor-like protein 2, FcRL2 (Fc receptor homolog 2, FcRH2, IFGP family protein 4, CD307b, FCRL2, FCRH2, IFGP4, IRTA4, SPAP1) | Fc receptor-like protein 4, FcRL4 (Fc receptor homolog 4, FcRH4, hIFGP2, Immune receptor translocation-associated protein 1, CD307d, FCRL4, IFGP2, IRTA1) | Fc receptor-like protein 3 (Fc receptor homolog 3, FcRH3, IFGP family protein 3, hIFGP3, Immune receptor translocation-associated protein 3, CD307c, FCRL3, FCRH3, IFGP3, IRTA3, SPAP2) | Fc receptor-like protein 1, FcRL1 (Fc receptor homolog 1, hIFGP1, Immune receptor translocation-associated protein 5, CD307a, FCRL1, FCRH1, IFGP1, IRTA5) | Fc receptor-like protein 5, FcR-like protein 5, FcRL5 (BXMAS1, Immune receptor translocation-associated protein 2, CD307e, FCRL5, FCRH5, IRTA2) | Immunoglobulin superfamily member 8 (CD81 partner 3, Keratinocytes-associated transmembrane protein 4, LIR-D1, Prostaglandin regulatory-like protein, PGRL, CD316, IGSF8, CD81P3, EWI2, KCT4) | Bone marrow stromal antigen 2 (HM1.24 antigen, Tetherin, CD317, BST2 | Receptor-type tyrosine-protein phosphatase C (CD45, Leukocyte common antigen, T200) | Signal transducer CD24 (Small cell lung carcinoma cluster 4 antigen, CD24, CD24A) | ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 (2'-phospho-ADP-ribosyl cyclase, 2'-phospho-cyclic-ADP-ribose transferase, ADP-ribosyl cyclase 1, ADPRC 1, cADPr hydrolase 1, T10, CD38) | B-cell receptor CD22 (B-lymphocyte cell adhesion molecule, BL-CAM, Sialic acid-binding Ig-like lectin 2, Siglec-2, T-cell surface antigen Leu-14, CD22) | C-X-C chemokine receptor type 4 (CXC-R4, CXCR-4, FB22, Fusin, HM89, LCR1, Leukocyte-derived seven transmembrane domain receptor, LESTR, Lipopolysaccharide-associated protein 3, LAP-3, LPS-associated p | B-lymphocyte antigen CD19 (B-lymphocyte surface antigen B4, Differentiation antigen CD19, T-cell surface antigen Leu-12, CD19) | B-lymphocyte antigen CD20 (B-lymphocyte surface antigen B1, Bp35, Leukocyte surface antigen Leu-16, Membrane-spanning 4-domains subfamily A member 1, MS4A1, CD20) | Complement receptor type 2 (Cr2, Complement C3d receptor, Epstein-Barr virus receptor, EBV receptor, CD21, CR2, C3DR) | Leukocyte antigen CD37 (Tetraspanin-26, Tspan-26, CD37, TSPAN26) | Tumor necrosis factor receptor superfamily member 5 (B-cell surface antigen CD40, Bp50, CD40L receptor, CDw40, CD40, TNFRSF5) | Beta-galactoside alpha-2,6-sialyltransferase 1 (Alpha 2,6-ST 1, B-cell antigen CD75, ST6Gal I, ST6GalI, Sialyltransferase 1, ST6GAL1, SIAT1) | B-cell antigen receptor complex-associated protein alpha chain (Ig-alpha, MB-1 membrane glycoprotein, Membrane-bound immunoglobulin-associated protein, Surface IgM-associated protein, CD79a, IGA, MB1) | B-cell antigen receptor complex-associated protein beta chain (B-cell-specific glycoprotein B29, Ig-beta, Immunoglobulin-associated B29 protein, CD79b) | Low affinity immunoglobulin gamma Fc region receptor II-a (IgG Fc receptor II-a, CDw32, Fc-gamma RII-a, Fc-gamma-RIIa, FcRII-a, CD32, FCGR2A) | Low affinity immunoglobulin gamma Fc region receptor II-b (IgG Fc receptor II-b, CDw32, Fc-gamma RII-b, Fc-gamma-RIIb, FcRII-b, CD32, FCGR2B, FCG2, IGFR2) | Low affinity immunoglobulin gamma Fc region receptor II-c (IgG Fc receptor II-c, CDw32, Fc-gamma RII-c, Fc-gamma-RIIc, FcRII-c, CD32, FCGR2C, FCG2, IGFR2) | Complement receptor type 1 (C3b/C4b receptor, CD35, CR1, C3BR) | Ectonucleoside triphosphate diphosphohydrolase 1 ( NTPDase 1, Ecto-ATP diphosphohydrolase 1, Ecto-ATPase 1, Ecto-apyrase, Lymphoid cell activation antigen, CD39, ENTPD1) | CD48 antigen (B-lymphocyte activation marker BLAST-1, BCM1 surface antigen, Leukocyte antigen MEM-102, SLAM family member 2, SLAMF2, Signaling lymphocytic activation molecule 2, TCT.1, CD48) | Integrin alpha-2 (CD49 antigen-like family member B, Collagen receptor, Platelet membrane glycoprotein Ia, GPIa, VLA-2 subunit alpha, CD49b, ITGA2, CD49B) | Integrin alpha-3 (CD49 antigen-like family member C, FRP-2, Galactoprotein B3, GAPB3, VLA-3 subunit alpha, CD49c, ITGA3, MSK18) | Integrin alpha-4 (CD49 antigen-like family member D, Integrin alpha-IV, VLA-4 subunit alpha, ITGA4, CD49D) | CAMPATH-1 antigen (CDw52, Cambridge pathology 1 antigen, Epididymal secretory protein E5, Human epididymis-specific protein 5, He5, CD52) | B-cell differentiation antigen CD72 (Lyb-2, CD72) | HLA class II histocompatibility antigen gamma chain (HLA-DR antigens-associated invariant chain, Ia antigen-associated invariant chain, p33, CD74, DHLAG) | CD75s | CD78 | SLAM family member 5 (Cell surface antigen MAX.3, Hly9-beta, Leukocyte differentiation antigen CD84, Signaling lymphocytic activation molecule 5, CD84, SLAMF5) | 4F2 cell-surface antigen heavy chain (4F2hc, 4F2 heavy chain antigen, Lymphocyte activation antigen 4F2 large subunit, Solute carrier family 3 member 2, CD98, SLC3A2, MDU1) | CD99 antigen (12E7, E2 antigen, Protein MIC2, T-cell surface glycoprotein E2, CD99, MIC2X) | Intercellular adhesion molecule 2 (ICAM-2, Lymphocyte function-associated AG-1 counter-receptor, CD102, Icam2) | Interferon gamma receptor 1 (IFN-gamma receptor 1, IFN-gamma-R1, CDw119, CD119, IFNGR1) | Interleukin-1 receptor type 2 (IL-1R-2, IL-1RT2, CD121 antigen-like family member B, CDw121b, IL-1R-beta, Interleukin-1 receptor type II, CD121b, IL1R2, IL1RB) | Interleukin-4 receptor subunit alpha (IL-4 receptor subunit alpha, IL-4R subunit alpha, IL-4R-alpha, IL-4RA, CD124, IL4R, IL4RA) | Neural cell adhesion molecule L1 (NCAM-L1, CD171, L1CAM, CAML1, MIC5) | CDw210 | CD213a1 | CD213a2 | T-lymphocyte surface antigen Ly-9 ( Cell surface molecule Ly-9, Lymphocyte antigen 9, SLAM family member 3, SLAMF3, Signaling lymphocytic activation molecule 3, CD229, LY9) | C-X-C chemokine receptor type 5 (CXCR-5, Monocyte-derived receptor 15, MDR-15, CD185, CXCR5, BLR1, MDR15) | C-C chemokine receptor type 2 (CC-CKR-2, CCR-2, CCR2, Monocyte chemoattractant protein 1 receptor, MCP-1-R, CD192, CMKBR2) | C-C chemokine receptor type 6 (CCR-6, Chemokine receptor-like 3, CKR-L3, DRY6, G-protein coupled receptor 29, GPR-CY4, GPRCY4, LARC receptor, CD196, CCR6, GPR29) | Interleukin-18 receptor 1 (IL-18R-1, IL-18R1, CD218 antigen-like family member A, CDw218a, IL1 receptor-related protein, IL-1Rrp, IL1R-rp, CD218a) | Interleukin-18 receptor accessory protein (IL-18 receptor accessory protein, IL-18RAcP, AcPL, CD218 antigen-like family member B, CDw218b, IL-1RAcPL, Interleukin-1 receptor 7, IL-1R7, Interleukin-18 r | Tumor necrosis factor receptor superfamily member 13B (Transmembrane activator and CAML interactor, CD267, TACI, TNFRSF13B) | Tumor necrosis factor receptor superfamily member 13C (B-cell-activating factor receptor, BAFF receptor, BAFF-R, BLyS receptor 3, CD268, BAFFR, BR3) | Tumor necrosis factor receptor superfamily member 17 (B-cell maturation protein, CD269, BCMA, BCM, TNFRSF17) | ICOS ligand (B7 homolog 2, B7-H2, B7-like protein Gl50, B7-related protein 1, B7RP-1, CD275, B7H2, B7RP1, ICOSL, KIAA0653) | Butyrophilin subfamily 3 member A2 (BTN3A2, BT3.2, BTF3, BTF4) | Butyrophilin subfamily 3 member A1 (CD277, BTN3A1, BTF5) | Leukocyte-associated immunoglobulin-like receptor 1 (LAIR-1, hLAIR1, CD305, LAIR1) | Fc receptor-like protein 5 (FcR-like protein 5, BXMAS1, Immune receptor translocation-associated protein 2, CD307, CD307e, FCRL5, IRTA2) | Immunoglobulin superfamily member 8, IgSF8 (CD81 partner 3, EWI-2, Keratinocytes-associated transmembrane protein 4, KCT-4, LIR-D1, Prostaglandin regulatory-like protein, PGRL, CD316, IGSF8, CD81P3, E | Bone marrow stromal antigen 2 (CD317, BST-2, HM1.24 antigen, Tetherin, BST2) | Junctional adhesion molecule B (JAM-B, Junctional adhesion molecule 2, JAM-2, Vascular endothelial junction-associated molecule, VE-JAM, CD322, JAM2, C21orf43, VEJAM) | Sialic acid-binding Ig-like lectin 6 (Siglec-6, CD33 antigen-like 1, CDw327, Obesity-binding protein 1, OB-BP1, CD327, SIGLEC6, CD33L, OBBP1) | B-lymphocyte antigen CD19 (B-lymphocyte surface antigen B4, Differentiation antigen CD19, T-cell surface antigen Leu-12, CD19) |
| Marker Molecule:type | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | Protein | RNA |
| Marker Molecule:category | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | CD molecule | |
| Subcellular Localization | Plasma membrane | Plasma membrane | Plasma membrane, Cytosol | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Endoplasmic reticulum, plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane, Golgi apparatus | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane, Secreted | Plasma membrane, Secreted | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane, Secreted | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane, Secreted | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane | Plasma membrane |
| Uniprot Id | P16150 | P28907 | P28908 | Q07108 | P32970 | P02786 | P33681 | P42081 | P01589 | P27487 | P10747 | Q01151 | Q13740 | P23510 | P50591 | Q96RJ3 | O75144 | Q15116 | Q9NR96 | Q96LA5 | Q96PJ5 | Q96P31 | Q96LA6 | Q96RD9 | Q969P0 | Q10589 | P08575 | P25063 | P28907 | P20273 | P61073 | P15391 | P11836 | P20023 | P11049 | P25942 | P15907 | P11912 | P40259 | P12318 | P31994 | P31995 | P17927 | P49961 | P09326 | P17301 | P26006 | P13612 | P31358 | P21854 | P04233 | Q9UIB8 | P08195 | P14209 | P13598 | P15260 | P27930 | P24394 | P32004 | Q9HBG7 | P32302 | P41597 | P51684 | Q13478 | O95256 | O14836 | Q96RJ3 | Q02223 | O75144 | Q96RD9 | Q969P0 | Q10589 | P15391 | ||||||||||
| Gene Id | 930 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Source Organism | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human | Human |
| Reference | PMID:22184681 | https://www.beckmancoulter.com/wsrportal/page/itemDetails?itemNumber=IM2651U#2/10//0/25/1/0/asc/2/IM2651U///0/1//0/ | https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf | https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf | https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf | https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf | https://www.beckmancoulter.com/wsrportal/page/itemDetails?itemNumber=A07409#2/10//0/25/1/0/asc/2/A07409///0/1//0/ | PMID:20839338 |
Image
| SHOGoiN Cell Id | 8010000000000000000000-001 |
|---|---|
| Image Id | 40 |
| Tissue | Immune system (blood) |
| Cell Type | B cell |
| Organism | Human |
| Cell Strain | |
| Location | Pancreas |
| Karyotype | |
| Race | Japanese |
| Age | 50 |
| Sex | Male |
| Medium | |
| Serum | |
| Other Chemical | |
| Feeder | |
| Other Treatment | |
| Culture Period | |
| Differentiaion | |
| Self Renewal Ability | |
| Onocogenic Transformation | |
| Knock Out Gene | |
| Knock In Gene | |
| Disease | malignant pleural mesothelioma |
| Cod | |
| Shooting Date | 2007.7.23 |
| Shooting Condition | normal or mild columnar epithelium hyperplasia |
| Embedding | Paraffin |
| Staining | Hematoxylin |
| Microscope | OLYMPUS DX50 |
| Camera | OLYMPUS DP20 |
| Image Size X | 1600 |
| Image Size Y | 1200 |
| Resolution | 72 |
| Magnification | 400 |
| Contact Person | Koji Yamanegi |
| yamanegi@hyo-med.ac.jp | |
| Telephone | 0798-45-6432 |
| Fax | 0798-45-6431 |
| Affiliation | Department of clinical pathology, Hyogo collage of medicine |
| Zip Code | 663-8501 |
| Address | 1-1, Mukogawa, Nishinomiya, Hyogo |
| Country | Japan |
| Note | |
| Nucleous Area | 646 |
| Nucleous Circularity | 0.88 |
| Nucleous Bending | 698 |
| Nucleous Convex Area | 67804.1 |
| Nucleous Ellipse Long Axis | 31.18 |
| Nucleous Inertia | 1.51 |
| Cell Area | 3629.5 |
| Cell Circularity | 0.49 |
| Cell Bending | 3.73 |
| Cell Convex Area | 4243 |
| Cell Ellipse Long Axis | 94.21 |
| Cell Inertia | 2.61E+06 |
| Cell-nucleous Area Ratio | 0.18 |
| Cell-nucleous Eccentricity1 | 0.04 |
| Cell-nucleous Eccentricity2 | 0.02 |
| Cell-nucleous Eccentricity3 | 0.08 |
| Cell-nucleous Eccentricity4 | 0.06 |