Image : Cell Image ID 457

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

8010000000000000000000-005

457

Immune system (blood):Lymphocyte:Human

Location	Stomach
Age	68
Sex	male
Race	Japanese
Disease	gastric cancer
Cause Of Death	-
Date	2011.9.22
Condition	normal or mild epithelium hyperplasia

Embedding Mehtod	paraffin
Staining Mehtod	hematoxylin
Microscope	OLYMPUS BX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	660	224	Area ratio	0.339394
Circularity	0.735018	0.852689	Eccentricity1	0.0534197
Convex area		255	Eccentricity2	0.0442097
Bending energy	2.22727	1.52	Eccentricity3	0.0990607
Elliptic long axis	31.9888	20.0681	Eccentricity3	0.0990607
Inertia moment	71803.6	8491.83	Eccentricity4	0.0704708

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	4 Mesodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	8010000000000000000000	005	Immune system class	Blood										Lymphocyte		CL:0000542		37, 53, 78, 157, 158, 159, 160, 161, 402, 414, 426, 456, 457, 499, 509, 510, 517, 527, 533, 599, 600, 601

Image

SHOGoiN Cell Id	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005	8010000000000000000000-005
Image Id	37	53	78	157	158	159	160	161	402	414	426	456	457	499	509	510	517	527	533	599	600	601
Tissue	Immune system (blood)	Bone	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)
Cell Type	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte	Lymphocyte
Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Small intestine	Bone	Stomach	Ureter	Ureter	Ureter	Ureter	Ureter	Large intestine	Nose	Stomach	Stomach	Stomach	Mouth	Mouth	Mouth	Nose	Immune system	Immune system	Immune system	Immune system	Immune system
Karyotype
Race			Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age			74	74	74	74	74	74	68	40	68	68	68	61	68	68	31	79	79	79	79	79
Sex			Male	female	female	female	female	female	male	female	male	male	male	male	female	female	female	Female	Female	Female	Female	Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease			stomach cancer colitis or Crohn's disease	bladder cancer	bladder cancer	bladder cancer	bladder cancer	bladder cancer	appendicitis	granuloma teleangiectaticum	gastric cancer	gastric cancer	gastric cancer	Mild epithelial hyperplasia with parakeratosis	Pleomorphic adenoma	Pleomorphic adenoma	Jaw deformity	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer
Cod
Shooting Date	2008.1.5	2005.8.12		2008.9.6	2008.9.6	2008.9.6	2008.9.6	2008.9.6	2011.4.8	2011.9.22	2011.9.22	2011.9.22	2011.9.22	2011.9.22	2011.9.22	2011.9.22	2011.9.22	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01
Shooting Condition			tissue from normal or mild esophagitis	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal tissue or mild epithelial hyperplasia	normal or mild epithelium hyperplasia	normal or mild columnar epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal	normal	normal or mild epithelium hyperplasia
Embedding	Paraffin		Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	paraffin	paraffin	paraffin	paraffin	paraffin	paraffin	paraffin	paraffin	paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin
Staining	Hematoxylin		Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin
Microscope	OLYMPUS DX50		OLYMPUS DX51	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50
Camera	OLYMPUS DP20		OLYMPUS DP21	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600		1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600
Image Size Y	1200	1392	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200
Resolution	72	1040	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72
Magnification	400		400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400
Contact Person	Koji Yamanegi	Takayuki Masuda	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	masudat@mail.tains.tohoku.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432		0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431		0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	980-8575	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	373	365.5	433	270.5	468	507	591	376.5	214.5	258.5	260	418	224	273.5	374.5	290.5	252	854.5	806	918.5	442	870.5
Nucleous Circularity	0.87	0.81	0.88	0.892954	0.875897	0.521142	0.74355	0.87925	0.868863	0.862912	0.884733	0.632746	0.852689	0.847052	0.776694	0.710129	0.881377	0.572503	0.325836	0.636992	0.411179	0.444057
Nucleous Bending	415	410	478	2.22642	0.388889	2.38298	1.08889	2.79365	1.61702	2.54902	1.52	1.60976	1.52	2.47273	2.73846	1.26984	1.52	2.48696	1.375	2.1982	4.18367	3.03704
Nucleous Convex Area	22624.1	22916.4	30589.3	300	509	635	651	413	244	293	292	474	255	309	419	336	284	999	1181	1042	589	1091
Nucleous Ellipse Long Axis	23.78	25.74	26.05	20.6788	27.6531	28.4076	38.4505	23.2979	19.3364	19.6253	19.0659	38.2463	20.0681	19.2729	28.4128	27.8815	19.6162	36.1317	56.1729	44.0009	26.1236	36.9552
Nucleous Inertia	1.26	0.62	1.21	11979.4	36398.3	42791.5	68345.3	22948.9	7688.87	10797.1	10895.4	43401.5	8491.83	12023.4	26290.6	17645.4	10342.9	118673	230594	153074	33823.1	126970
Cell Area	872	1322.5	757	496	782.5	507	1566.5	691.5	214.5	365	403	1077.5	660	592	1403	1416.5	476.5	228.5	343	183.5	203	410.5
Cell Circularity	0.61	0.52	0.41	0.42195	0.657141	0.521142	0.560303	0.678673	0.868863	0.626003	0.582335	0.549651	0.735018	0.478327	0.635901	0.523435	0.351775	0.914272	0.513728	0.862763	0.854841	0.826296
Cell Bending	3.79	2.08	2.92	4.72	3.25234	2.38298	2.83436	3.46392	1.61702	3	4.35	3.74815	2.22727	2.01923	3.34286	2.52903	4.55856	0.285714	0.55	1.72093	1.5	1.37313
Cell Convex Area	1014	1540	999	645	916	635	1803	790										256	403	209	229	458
Cell Ellipse Long Axis	40.81	51.38	39.24	29.7407	35.2814	28.4076	52.1175	30.4182	19.3364	22.2554	24.4413	55.8904	31.9888	29.5902	47.0745	50.0291	27.5666	18.9525	38.6207	15.9789	18.9851	26.351
Cell Inertia	133146	311737	103158	42611.4	102388	42791.5	412236	77347.9	7688.87	21703.1	26759.8	257750	71803.6	57524.6	325012	345844	38700	8529.07	35696.4	5465.35	6952.02	28227.4
Cell-nucleous Area Ratio	0.43	0.28	0.57	0.545363	0.598083	0.686391	0.377274	0.544469	1	0.708219	0.645161	0.387935	0.339394	0.461993	0.266928	0.205083	0.528856	3.73961	2.34985	5.00545	2.17734	2.12058
Cell-nucleous Eccentricity1	0.15	0.03	0.04	0.0445715	0.0701972	0	0.0773152	0.0687825	0	0	0	0.0904936	0.0534197	0.0860518	0.073569	0.246546	0.096392	0.268229	0.269857	0.213025	0.163494	0.100176
Cell-nucleous Eccentricity2	0.1	0.02	0.03	0.033624	0.0566871	0	0.0575622	0.06575	0	0	0	0.0400081	0.0442097	0.075568	0.0600841	0.181002	0.081115	0.217549	0.0818803	0.197904	0.11778	0.0758984
Cell-nucleous Eccentricity3	0.21	0.05	0.05	0.0597851	0.0925772	0	0.151588	0.0965456	0	0	0	0.157408	0.0990607	0.123006	0.166358	0.675073	0.135309	0.133921	0.146849	0.118068	0.099341	0.0648008
Cell-nucleous Eccentricity4	0.17	0.04	0.04	0.0483587	0.0723247	0	0.0780223	0.0858445	0	0	0	0.058465	0.0704708	0.116021	0.0995477	0.324782	0.113991	0.114113	0.0562954	0.0718685	0.0855957	0.0541196