Image : Cell Image ID 548

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

8010000000000000000000-003

548

Immune system (blood):Eosinophil:Human

Location	Immune system
Age	79
Sex	Female
Race	Japanese
Disease	Ascending colon cancer
Cause Of Death	-
Date	2013.08.01
Condition

Embedding Mehtod	Paraffin
Staining Mehtod	Hematoxylin
Microscope	OLYMPUS DX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	308	823.5	Area ratio	2.6737
Circularity	0.79904	0.545119	Eccentricity1	0.256324
Convex area	341	997	Eccentricity2	0.167182
Bending energy	2.2069	4.1913	Eccentricity3	0.153554
Elliptic long axis	24.6624	40.3968	Eccentricity3	0.153554
Inertia moment	16893.3	120663	Eccentricity4	0.102065

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	4 Mesodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	8010000000000000000000	003	Immune system class	Blood										Eosinophil		CL:0000771		58, 79, 436, 437, 453, 511, 526, 541, 548, 554, 558, 568, 597, 598, 607, 646, 656, 657, 661, 662, 694

Image

SHOGoiN Cell Id	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003	8010000000000000000000-003
Image Id	58	79	436	437	453	511	526	541	548	554	558	568	597	598	607	646	656	657	661	662	694
Tissue	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)
Cell Type	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil	Eosinophil
Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Bone	Stomach	Stomach	Stomach	Stomach	Nose	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system
Karyotype
Race		Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age		74	68	68	68	31	79	79	79	79	79	79	79	79	79	79	79	79	79	79	79
Sex		Male	male	male	male	female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease		stomach cancer colitis or Crohn's disease	gastric cancer	gastric cancer	gastric cancer	Jaw deformity	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer	Ascending colon cancer
Cod
Shooting Date	2005.8.12		2011.9.22	2011.9.22	2011.9.22	2011.9.22	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01	2013.08.01
Shooting Condition		tissue from normal or mild esophagitis	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia	normal or mild epithelium hyperplasia
Embedding		Paraffin	paraffin	paraffin	paraffin	paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin
Staining		Hematoxylin	hematoxylin	hematoxylin	hematoxylin	hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin
Microscope		OLYMPUS DX51	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS BX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50
Camera		OLYMPUS DP21	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X		1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600
Image Size Y	1392	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200
Resolution	1040	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72
Magnification		400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400	400
Contact Person	Takayuki Masuda	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	masudat@mail.tains.tohoku.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone		0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax		0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	980-8575	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	1615	213	159.5	121.5	212	164.5	5377.5	2269	823.5	1083	1043.5	6513	1299.5	881	4173.5	3876.5	910	1303.5	1065	491.5	6527
Nucleous Circularity	0.78	0.87	0.717054	0.758357	0.775078	0.730025	0.34349	0.291007	0.545119	0.286087	0.334939	0.365572	0.436682	0.585241	0.279175	0.343667	0.433006	0.358131	0.370077	0.472547	0.367111
Nucleous Bending	1717	242	0.666667	0.756757	1.53846	0.595745	1.75853	3.78462	4.1913	3.33333	3.0559	1.27885	3.19497	1.7069	3.1339	1.24925	4.16176	3.87571	4.8642	3.73737	1.54067
Nucleous Convex Area	487338	7354.44	188	144	248	196	6486	3139	997	1586	1454	7275	1629	1030	5050	4542	1124	1784	1405	655	7504
Nucleous Ellipse Long Axis	60.17	17.83	20.1557	17.1208	21.2162	20.5123	141.658	80.0073	40.3968	54.1539	44.9137	197.097	63.3884	36.537	154.815	153.376	37.9854	43.9401	44.8153	30.5763	172.872
Nucleous Inertia	0.45	2.54	5204.34	2845	8266.11	5447.14	7.91E+06	1.38E+06	120663	290726	200107	1.62E+07	432872	129202	7.00E+06	5.79E+06	138456	290060	201732	42360.5	1.34E+07
Cell Area	2405.5	2466.5	493	685.5	869.5	594	490.5	577.5	308	274.5	301.5	806.5	396.5	209.5	592.5	567	308	252.5	688	95.5	621
Cell Circularity	0.72	0.63	0.763431	0.653507	0.614955	0.495716	0.501976	0.774305	0.79904	0.882306	0.83513	0.705679	0.877457	0.726836	0.578599	0.748018	0.847021	0.790507	0.824092	0.850839	0.7685
Cell Bending	2.82	2.81	2.05263	4.16495	2.83186	1.72549	0.602151	1.87342	2.2069	0.45283	0.45614	1.3271	1.23077	0.612245	1.05618	0.55814	1.42857	2.37736	1.48889	0.545455	0.488889
Cell Convex Area	2645	2796					560	639	341	304	332	882	438	241	656	636	343	285	742	113	690
Cell Ellipse Long Axis	59.94	69.65	26.1168	32.4591	34.3822	34.3935	47.596	33.8803	24.6624	19.7357	23.938	48.8807	23.3674	23.6573	51.2459	32.8248	22.407	22.5344	37.549	12.9955	33.0214
Cell Inertia	939664	1.11E+06	39300	78086.5	123776	62718.4	73901.2	59821.7	16893.3	12141.8	15771.9	142460	25386.4	9021.25	102144	57749.5	15666.7	11488.8	84837	1538.98	67849
Cell-nucleous Area Ratio	0.67	0.09	0.323529	0.177243	0.243818	0.276936	10.9633	3.929	2.6737	3.94536	3.46103	8.07564	3.27743	4.20525	7.04388	6.83686	2.95455	5.16238	1.54797	5.1466	10.5105
Cell-nucleous Eccentricity1	0.05	0.27	0.0815543	0.148813	0.214871	0.137608	3.19416	0.983976	0.256324	0.606134	0.195097	2.85656	0.663624	0.196422	3.01651	1.66011	0.113022	0.538146	0.0424355	0.299365	2.33404
Cell-nucleous Eccentricity2	0.05	0.17	0.0765792	0.127025	0.205661	0.0919439	0.92826	0.647329	0.167182	0.548077	0.132103	1.23597	0.617192	0.0945191	0.883091	1.13744	0.0892577	0.346592	0.0266318	0.217647	1.74307
Cell-nucleous Eccentricity3	0.08	0.8	0.196478	0.448656	0.551054	0.306739	0.889024	0.562366	0.153554	0.387241	0.0992294	1.40287	0.54107	0.0706145	1.26576	1.11777	0.0639051	0.190549	0.0315589	0.130777	1.17751
Cell-nucleous Eccentricity4	0.05	0.68	0.0992276	0.240825	0.333286	0.154165	0.311887	0.274121	0.102065	0.199739	0.0704078	0.306526	0.227521	0.0612001	0.292315	0.24343	0.0526518	0.177748	0.0223138	0.092504	0.332956