Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 548
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
8010000000000000000000-003
548
Immune system (blood):Eosinophil:Human
Location
Immune system
Age
79
Sex
Female
Race
Japanese
Disease
Ascending colon cancer
Cause Of Death
-
Date
2013.08.01
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
308
823.5
Area ratio
2.6737
Circularity
0.79904
0.545119
Eccentricity1
0.256324
Convex area
341
997
Eccentricity2
0.167182
Bending energy
2.2069
4.1913
Eccentricity3
0.153554
Elliptic long axis
24.6624
40.3968
Eccentricity3
0.153554
Inertia moment
16893.3
120663
Eccentricity4
0.102065
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
4
Mesodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
8010000000000000000000
003
Immune system class
Blood
Eosinophil
CL:0000771
58
,
79
,
436
,
437
,
453
,
511
,
526
,
541
,
548
,
554
,
558
,
568
,
597
,
598
,
607
,
646
,
656
,
657
,
661
,
662
,
694
Image
SHOGoiN Cell Id
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
8010000000000000000000-003
Image Id
58
79
436
437
453
511
526
541
548
554
558
568
597
598
607
646
656
657
661
662
694
Tissue
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Cell Type
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Eosinophil
Organism
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Bone
Stomach
Stomach
Stomach
Stomach
Nose
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
74
68
68
68
31
79
79
79
79
79
79
79
79
79
79
79
79
79
79
79
Sex
Male
male
male
male
female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
stomach cancer colitis or Crohn's disease
gastric cancer
gastric cancer
gastric cancer
Jaw deformity
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Ascending colon cancer
Cod
Shooting Date
2005.8.12
2011.9.22
2011.9.22
2011.9.22
2011.9.22
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
2013.08.01
Shooting Condition
tissue from normal or mild esophagitis
normal or mild epithelium hyperplasia
normal or mild epithelium hyperplasia
normal or mild epithelium hyperplasia
normal or mild epithelium hyperplasia
Embedding
Paraffin
paraffin
paraffin
paraffin
paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
hematoxylin
hematoxylin
hematoxylin
hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX51
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS BX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP21
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1392
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
Resolution
1040
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
Contact Person
Takayuki Masuda
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
masudat@mail.tains.tohoku.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
980-8575
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
1615
213
159.5
121.5
212
164.5
5377.5
2269
823.5
1083
1043.5
6513
1299.5
881
4173.5
3876.5
910
1303.5
1065
491.5
6527
Nucleous Circularity
0.78
0.87
0.717054
0.758357
0.775078
0.730025
0.34349
0.291007
0.545119
0.286087
0.334939
0.365572
0.436682
0.585241
0.279175
0.343667
0.433006
0.358131
0.370077
0.472547
0.367111
Nucleous Bending
1717
242
0.666667
0.756757
1.53846
0.595745
1.75853
3.78462
4.1913
3.33333
3.0559
1.27885
3.19497
1.7069
3.1339
1.24925
4.16176
3.87571
4.8642
3.73737
1.54067
Nucleous Convex Area
487338
7354.44
188
144
248
196
6486
3139
997
1586
1454
7275
1629
1030
5050
4542
1124
1784
1405
655
7504
Nucleous Ellipse Long Axis
60.17
17.83
20.1557
17.1208
21.2162
20.5123
141.658
80.0073
40.3968
54.1539
44.9137
197.097
63.3884
36.537
154.815
153.376
37.9854
43.9401
44.8153
30.5763
172.872
Nucleous Inertia
0.45
2.54
5204.34
2845
8266.11
5447.14
7.91E+06
1.38E+06
120663
290726
200107
1.62E+07
432872
129202
7.00E+06
5.79E+06
138456
290060
201732
42360.5
1.34E+07
Cell Area
2405.5
2466.5
493
685.5
869.5
594
490.5
577.5
308
274.5
301.5
806.5
396.5
209.5
592.5
567
308
252.5
688
95.5
621
Cell Circularity
0.72
0.63
0.763431
0.653507
0.614955
0.495716
0.501976
0.774305
0.79904
0.882306
0.83513
0.705679
0.877457
0.726836
0.578599
0.748018
0.847021
0.790507
0.824092
0.850839
0.7685
Cell Bending
2.82
2.81
2.05263
4.16495
2.83186
1.72549
0.602151
1.87342
2.2069
0.45283
0.45614
1.3271
1.23077
0.612245
1.05618
0.55814
1.42857
2.37736
1.48889
0.545455
0.488889
Cell Convex Area
2645
2796
560
639
341
304
332
882
438
241
656
636
343
285
742
113
690
Cell Ellipse Long Axis
59.94
69.65
26.1168
32.4591
34.3822
34.3935
47.596
33.8803
24.6624
19.7357
23.938
48.8807
23.3674
23.6573
51.2459
32.8248
22.407
22.5344
37.549
12.9955
33.0214
Cell Inertia
939664
1.11E+06
39300
78086.5
123776
62718.4
73901.2
59821.7
16893.3
12141.8
15771.9
142460
25386.4
9021.25
102144
57749.5
15666.7
11488.8
84837
1538.98
67849
Cell-nucleous Area Ratio
0.67
0.09
0.323529
0.177243
0.243818
0.276936
10.9633
3.929
2.6737
3.94536
3.46103
8.07564
3.27743
4.20525
7.04388
6.83686
2.95455
5.16238
1.54797
5.1466
10.5105
Cell-nucleous Eccentricity1
0.05
0.27
0.0815543
0.148813
0.214871
0.137608
3.19416
0.983976
0.256324
0.606134
0.195097
2.85656
0.663624
0.196422
3.01651
1.66011
0.113022
0.538146
0.0424355
0.299365
2.33404
Cell-nucleous Eccentricity2
0.05
0.17
0.0765792
0.127025
0.205661
0.0919439
0.92826
0.647329
0.167182
0.548077
0.132103
1.23597
0.617192
0.0945191
0.883091
1.13744
0.0892577
0.346592
0.0266318
0.217647
1.74307
Cell-nucleous Eccentricity3
0.08
0.8
0.196478
0.448656
0.551054
0.306739
0.889024
0.562366
0.153554
0.387241
0.0992294
1.40287
0.54107
0.0706145
1.26576
1.11777
0.0639051
0.190549
0.0315589
0.130777
1.17751
Cell-nucleous Eccentricity4
0.05
0.68
0.0992276
0.240825
0.333286
0.154165
0.311887
0.274121
0.102065
0.199739
0.0704078
0.306526
0.227521
0.0612001
0.292315
0.24343
0.0526518
0.177748
0.0223138
0.092504
0.332956