Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 871
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1030005020100000000000-222
871
Eyeball:Ganglion cell:Human
Location
Eyeball
Age
65
Sex
Female
Race
Japanese
Disease
Orbital sebaceous carcinoma
Cause Of Death
-
Date
2014.02.24
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
503.5
712
Area ratio
1.4141
Circularity
0.705983
0.32271
Eccentricity1
0.112407
Convex area
557
959
Eccentricity2
0.0658935
Bending energy
0.493827
2.85714
Eccentricity3
0.0869281
Elliptic long axis
33.9346
39.805
Eccentricity3
0.0869281
Inertia moment
49626.4
103102
Eccentricity4
0.0561756
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030005020100000000000
222
Head
Eye
Eyeball
Retina
Layer of rods and cones
Retinal ganglion cell
CL:0000740
871
,
872
,
873
,
874
,
875
,
879
,
880
,
881
,
882
,
896
,
897
Image
SHOGoiN Cell Id
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
1030005020100000000000-222
Image Id
871
872
873
874
875
879
880
881
882
896
897
Tissue
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Cell Type
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Ganglion cell
Organism
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
65
65
65
65
65
65
65
65
65
65
65
Sex
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
Resolution
72
72
72
72
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
712
1252.5
1406
1254.5
2385
3282
2302
2733
1411.5
1764.5
4227
Nucleous Circularity
0.32271
0.397872
0.402634
0.502651
0.566727
0.659319
0.597098
0.448458
0.504098
0.509808
0.517464
Nucleous Bending
2.85714
2.47904
3.29213
3.04636
2.5102
2.50943
4.0989
2.81897
3.22013
3.30286
4.37956
Nucleous Convex Area
959
1562
1847
1472
2674
3620
2626
3303
1747
2137
4770
Nucleous Ellipse Long Axis
39.805
61.0052
55.4673
44.8575
79.7035
67.1209
61.5057
67.9572
47.7431
55.5015
94.5613
Nucleous Inertia
103102
357739
375975
264403
1.17E+06
1.73E+06
883496
1.29E+06
349039
553042
3.23E+06
Cell Area
503.5
378
533
469.5
645
564
526
767.5
327
533.5
844
Cell Circularity
0.705983
0.699149
0.792353
0.856175
0.842521
0.873377
0.829723
0.811595
0.820476
0.824306
0.737978
Cell Bending
0.493827
0.685714
2.7561
2.53521
1.66667
2.42105
1.13158
2.92784
1.46667
2.35443
0.48
Cell Convex Area
557
425
590
513
700
615
571
833
368
585
914
Cell Ellipse Long Axis
33.9346
32.6522
34.0905
29.3892
34.2373
29.6243
31.7667
40.0272
22.4598
31.1291
46.7594
Cell Inertia
49626.4
30239.2
52323.6
37519.4
70813.2
51771.8
48320.5
105450
17760.8
48653.9
145206
Cell-nucleous Area Ratio
1.4141
3.31349
2.6379
2.67199
3.69767
5.81915
4.37643
3.56091
4.31651
3.3074
5.00829
Cell-nucleous Eccentricity1
0.112407
0.189547
0.0704715
0.0980349
0.54734
0.275889
0.525805
0.555976
0.192063
0.287961
1.02403
Cell-nucleous Eccentricity2
0.0658935
0.0866228
0.0414841
0.0680522
0.38417
0.226443
0.351952
0.339806
0.160534
0.203172
0.506989
Cell-nucleous Eccentricity3
0.0869281
0.103739
0.0403278
0.0551023
0.34024
0.106686
0.231413
0.253626
0.0929096
0.151015
0.410668
Cell-nucleous Eccentricity4
0.0561756
0.0463637
0.0254963
0.0445856
0.165023
0.0999421
0.181777
0.200148
0.0755199
0.113953
0.2507