Image : Cell Image ID 871

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

1030005020100000000000-222

871

Eyeball:Ganglion cell:Human

Location	Eyeball
Age	65
Sex	Female
Race	Japanese
Disease	Orbital sebaceous carcinoma
Cause Of Death	-
Date	2014.02.24
Condition

Embedding Mehtod	Paraffin
Staining Mehtod	Hematoxylin
Microscope	OLYMPUS DX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	503.5	712	Area ratio	1.4141
Circularity	0.705983	0.32271	Eccentricity1	0.112407
Convex area	557	959	Eccentricity2	0.0658935
Bending energy	0.493827	2.85714	Eccentricity3	0.0869281
Elliptic long axis	33.9346	39.805	Eccentricity3	0.0869281
Inertia moment	49626.4	103102	Eccentricity4	0.0561756

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	2 Ectodermal	4 Terminally differentiated	7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	1030005020100000000000	222	Head	Eye		Eyeball	Retina	Layer of rods and cones						Retinal ganglion cell		CL:0000740		871, 872, 873, 874, 875, 879, 880, 881, 882, 896, 897

Image

SHOGoiN Cell Id	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222	1030005020100000000000-222
Image Id	871	872	873	874	875	879	880	881	882	896	897
Tissue	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball
Cell Type	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell	Ganglion cell
Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball
Karyotype
Race	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age	65	65	65	65	65	65	65	65	65	65	65
Sex	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma
Cod
Shooting Date	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24
Shooting Condition
Embedding	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin
Staining	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin
Microscope	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50
Camera	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600
Image Size Y	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200
Resolution	72	72	72	72	72	72	72	72	72	72	72
Magnification	400	400	400	400	400	400	400	400	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	712	1252.5	1406	1254.5	2385	3282	2302	2733	1411.5	1764.5	4227
Nucleous Circularity	0.32271	0.397872	0.402634	0.502651	0.566727	0.659319	0.597098	0.448458	0.504098	0.509808	0.517464
Nucleous Bending	2.85714	2.47904	3.29213	3.04636	2.5102	2.50943	4.0989	2.81897	3.22013	3.30286	4.37956
Nucleous Convex Area	959	1562	1847	1472	2674	3620	2626	3303	1747	2137	4770
Nucleous Ellipse Long Axis	39.805	61.0052	55.4673	44.8575	79.7035	67.1209	61.5057	67.9572	47.7431	55.5015	94.5613
Nucleous Inertia	103102	357739	375975	264403	1.17E+06	1.73E+06	883496	1.29E+06	349039	553042	3.23E+06
Cell Area	503.5	378	533	469.5	645	564	526	767.5	327	533.5	844
Cell Circularity	0.705983	0.699149	0.792353	0.856175	0.842521	0.873377	0.829723	0.811595	0.820476	0.824306	0.737978
Cell Bending	0.493827	0.685714	2.7561	2.53521	1.66667	2.42105	1.13158	2.92784	1.46667	2.35443	0.48
Cell Convex Area	557	425	590	513	700	615	571	833	368	585	914
Cell Ellipse Long Axis	33.9346	32.6522	34.0905	29.3892	34.2373	29.6243	31.7667	40.0272	22.4598	31.1291	46.7594
Cell Inertia	49626.4	30239.2	52323.6	37519.4	70813.2	51771.8	48320.5	105450	17760.8	48653.9	145206
Cell-nucleous Area Ratio	1.4141	3.31349	2.6379	2.67199	3.69767	5.81915	4.37643	3.56091	4.31651	3.3074	5.00829
Cell-nucleous Eccentricity1	0.112407	0.189547	0.0704715	0.0980349	0.54734	0.275889	0.525805	0.555976	0.192063	0.287961	1.02403
Cell-nucleous Eccentricity2	0.0658935	0.0866228	0.0414841	0.0680522	0.38417	0.226443	0.351952	0.339806	0.160534	0.203172	0.506989
Cell-nucleous Eccentricity3	0.0869281	0.103739	0.0403278	0.0551023	0.34024	0.106686	0.231413	0.253626	0.0929096	0.151015	0.410668
Cell-nucleous Eccentricity4	0.0561756	0.0463637	0.0254963	0.0445856	0.165023	0.0999421	0.181777	0.200148	0.0755199	0.113953	0.2507