Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 877
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1030005040202000200000-207
877
Eyeball:Pigment epithelial cell:Human
Location
Eyeball
Age
65
Sex
Female
Race
Japanese
Disease
Orbital sebaceous carcinoma
Cause Of Death
-
Date
2014.02.24
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
563.5
1598
Area ratio
2.83585
Circularity
0.822061
0.41192
Eccentricity1
0.221373
Convex area
607
2144
Eccentricity2
0.161121
Bending energy
1.86667
3.03226
Eccentricity3
0.113359
Elliptic long axis
31.6471
49.0552
Eccentricity3
0.113359
Inertia moment
53720.4
452547
Eccentricity4
0.103945
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030005040202000200000
207
Head
Eye
Eyeball
Uvea (tunica vasculosa bulbi)
Ciliary body
Pars ciliaris of the retina
Pigment epithelium
Pigment epithelial cell
CL:0002565
876
,
877
,
878
Image
SHOGoiN Cell Id
1030005040202000200000-207
1030005040202000200000-207
1030005040202000200000-207
Image Id
876
877
878
Tissue
Eyeball
Eyeball
Eyeball
Cell Type
Pigment epithelial cell
Pigment epithelial cell
Pigment epithelial cell
Organism
Human
Human
Human
Cell Strain
Location
Eyeball
Eyeball
Eyeball
Karyotype
Race
Japanese
Japanese
Japanese
Age
65
65
65
Sex
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
Image Size Y
1200
1200
1200
Resolution
72
72
72
Magnification
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Note
Nucleous Area
2377.5
1598
4609
Nucleous Circularity
0.516316
0.41192
0.410138
Nucleous Bending
2.83092
3.03226
2.92308
Nucleous Convex Area
2868
2144
5611
Nucleous Ellipse Long Axis
64.843
49.0552
82.2463
Nucleous Inertia
952481
452547
3.61E+06
Cell Area
514
563.5
1337.5
Cell Circularity
0.874524
0.822061
0.861961
Cell Bending
1.71053
1.86667
1.2562
Cell Convex Area
563
607
1415
Cell Ellipse Long Axis
28.7469
31.6471
46.2734
Cell Inertia
43435.7
53720.4
293797
Cell-nucleous Area Ratio
4.62549
2.83585
3.44598
Cell-nucleous Eccentricity1
0.571087
0.221373
0.164417
Cell-nucleous Eccentricity2
0.452222
0.161121
0.131453
Cell-nucleous Eccentricity3
0.269845
0.113359
0.0829388
Cell-nucleous Eccentricity4
0.200484
0.103945
0.0739579