Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 924
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1030005010100000000000-258
924
Eyeball:Vascular endothelial cell:Human
Location
Eyeball
Age
65
Sex
Female
Race
Japanese
Disease
Orbital sebaceous carcinoma
Cause Of Death
-
Date
2014.02.24
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
355.5
1449
Area ratio
4.07595
Circularity
0.599471
0.482275
Eccentricity1
0.427094
Convex area
409
1782
Eccentricity2
0.166824
Bending energy
0.676056
1.55556
Eccentricity3
0.172554
Elliptic long axis
34.9528
57.5149
Eccentricity3
0.172554
Inertia moment
31387.9
419351
Eccentricity4
0.101382
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
4
Mesodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030005010100000000000
258
Head
Eye
Eyeball
Fibrous tunica
Sclera
Vascular endothelial cell
CL:0002139
911
,
912
,
913
,
914
,
915
,
921
,
922
,
923
,
924
,
925
Image
SHOGoiN Cell Id
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
1030005010100000000000-258
Image Id
911
912
913
914
915
921
922
923
924
925
Tissue
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Cell Type
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Vascular endothelial cell
Organism
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
65
65
65
65
65
65
65
65
65
65
Sex
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
Resolution
72
72
72
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
2012.5
1400
1215.5
1082.5
1071
1790.5
708
1276.5
1449
1953.5
Nucleous Circularity
0.537588
0.43847
0.431862
0.441966
0.326153
0.40327
0.429764
0.502828
0.482275
0.381939
Nucleous Bending
4.63784
1.95238
2.80255
2.72848
5.21176
1.31343
3.79032
2.56774
1.55556
3.08837
Nucleous Convex Area
2297
1795
1465
1362
1425
2485
913
1603
1782
2563
Nucleous Ellipse Long Axis
67.0239
51.5356
58.6749
54.2049
54.73
69.3232
43.7116
52.7138
57.5149
71.7199
Nucleous Inertia
776717
363199
313102
259530
239778
762070
104658
316478
419351
859603
Cell Area
276
395.5
349.5
294
276.5
488.5
248.5
385.5
355.5
418.5
Cell Circularity
0.848319
0.570988
0.47532
0.483037
0.482389
0.533218
0.557084
0.641941
0.599471
0.574951
Cell Bending
1.40741
0.465753
0.426667
2.85
1.68831
0.597701
1.97015
1.56962
0.676056
1.74026
Cell Convex Area
309
436
403
355
329
555
297
434
409
468
Cell Ellipse Long Axis
22.0506
41.3261
45.3001
38.9807
36.503
44.8237
30.716
37.3376
34.9528
39.7768
Cell Inertia
12918.9
45424.6
45375.6
29581.8
24758.6
68508.7
16905.4
36969
31387.9
47466.5
Cell-nucleous Area Ratio
7.29167
3.53982
3.47783
3.68197
3.87342
3.6653
2.84909
3.31128
4.07595
4.66786
Cell-nucleous Eccentricity1
1.16048
0.326638
0.422882
0.368647
0.496082
0.347151
0.282974
0.41926
0.427094
0.265016
Cell-nucleous Eccentricity2
0.847211
0.0997701
0.0936563
0.0924957
0.136975
0.111548
0.0976688
0.151506
0.166824
0.0906446
Cell-nucleous Eccentricity3
0.477174
0.114318
0.156794
0.138083
0.187269
0.142695
0.13733
0.175981
0.172554
0.100184
Cell-nucleous Eccentricity4
0.27873
0.080005
0.0723076
0.0665171
0.0913576
0.0721259
0.0686317
0.107313
0.101382
0.0502727