Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
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FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 946
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1030005040200020000000-259
946
Eyeball:Ciliary muscle cell:Human
Location
Eyeball
Age
65
Sex
Female
Race
Japanese
Disease
Orbital sebaceous carcinoma
Cause Of Death
-
Date
2014.02.24
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
886.5
2335.5
Area ratio
2.63452
Circularity
0.621117
0.351103
Eccentricity1
0.249946
Convex area
964
2864
Eccentricity2
0.0866637
Bending energy
1.36449
4.27615
Eccentricity3
0.133367
Elliptic long axis
57.6943
79.9092
Eccentricity3
0.133367
Inertia moment
204088
1.20E+06
Eccentricity4
0.062571
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030005040200020000000
259
Head
Eye
Eyeball
Uvea (tunica vasculosa bulbi)
Ciliary body
Ciliary muscle
Ciliary muscle cell
CL:1000443
926
,
927
,
928
,
929
,
930
,
931
,
932
,
933
,
934
,
935
,
940
,
941
,
942
,
943
,
944
,
945
,
946
,
947
,
948
,
949
SHOGoiN Cell Marker
Cell Type Name
Ciliary muscle cell
Cell Type Subclass
SHOGoiN Cell Id
1030005040200020000000-259
Anatomical Location
Eye, ciliary body
Marker Molecule:name
Podoplanin (Aggrus, Glycoprotein 36, Gp36, PA2.26 antigen, T1-alpha, T1A, Pdpn, PDPN, GP36)
Marker Molecule:type
Protein
Marker Molecule:category
Subcellular Localization
Plasma membrane
Uniprot Id
Q86YL7
Gene Id
10630
Source Organism
Human
Reference
PMID:19737877
Image
SHOGoiN Cell Id
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
1030005040200020000000-259
Image Id
926
927
928
929
930
931
932
933
934
935
940
941
942
943
944
945
946
947
948
949
Tissue
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Cell Type
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Ciliary muscle cell
Organism
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
65
Sex
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
Resolution
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
534
1946
1601.5
1588
1491
3259.5
2900.5
2730
2530.5
2422.5
870.5
2139.5
2418
1696.5
2991.5
1286.5
2335.5
2811.5
2941
1537
Nucleous Circularity
0.468029
0.368625
0.586516
0.410618
0.448864
0.414664
0.4417
0.57639
0.481313
0.497447
0.399674
0.32914
0.388224
0.417895
0.439411
0.557647
0.351103
0.423667
0.416831
0.448674
Nucleous Bending
5.21154
5.4717
2.45161
4.08696
3.34884
2.81509
2.4721
3.82857
2.53394
2.60094
3.46099
3.64017
1.85
3.2381
1.93574
1.93103
4.27615
1.7384
3.10853
3.19318
Nucleous Convex Area
685
2435
1857
1988
1750
4057
3392
3107
2974
2825
1117
2723
2951
2087
3591
1508
2864
3727
3553
1875
Nucleous Ellipse Long Axis
41.2366
73.8075
54.8893
51.3771
57.4009
77.4389
86.018
63.7382
72.3698
76.4104
40.452
76.5184
80.4335
58.8104
90.2957
53.4884
79.9092
95.6199
85.4395
46.2183
Nucleous Inertia
71085.2
849863
450256
430333
424905
1.90E+06
1.71E+06
1.22E+06
1.16E+06
1.14E+06
130552
1.00E+06
1.24E+06
529964
1.94E+06
307725
1.20E+06
2.09E+06
1.75E+06
389783
Cell Area
185
929.5
504
498.5
435.5
1207
1230.5
932.5
872
673.5
484.5
964.5
738.5
326.5
1328.5
247
886.5
875.5
890
724.5
Cell Circularity
0.468718
0.629041
0.871372
0.85014
0.817074
0.835823
0.800856
0.883688
0.847032
0.657016
0.835686
0.610046
0.651445
0.895233
0.637378
0.779246
0.621117
0.556459
0.711257
0.787867
Cell Bending
2.41379
5.31532
1.86111
1.9726
0.637681
0.561404
1.76068
0.868687
1.02041
0.525253
0.426667
0.588235
0.366972
1.25424
0.993289
0.555556
1.36449
1.09402
1.42593
1.65591
Cell Convex Area
219
1010
549
541
478
1286
1310
991
935
743
531
1045
805
361
1441
281
964
967
959
788
Cell Ellipse Long Axis
29.4013
56.7163
27.3038
27.1792
29.6933
47.6229
52.4322
40.0378
40.1804
46.532
30.6341
61.1293
51.0822
21.8498
69.1529
24.1971
57.6943
61.7967
48.6064
37.1409
Cell Inertia
11243.4
214846
41152
40388.8
33544.2
250481
279720
144840
129834
105597
40979.5
243930
134937
17184.1
446497
11695.9
204088
222465
164037
91355.8
Cell-nucleous Area Ratio
2.88649
2.0936
3.17758
3.18556
3.42365
2.7005
2.35717
2.92761
2.90195
3.59688
1.7967
2.21825
3.2742
5.19602
2.25179
5.2085
2.63452
3.21131
3.30449
2.12146
Cell-nucleous Eccentricity1
0
0.0674159
0.084357
0.153301
0.266822
0.127443
0.170158
0.215432
0.161791
0.409335
0.069692
0.0490847
0.22772
0.0524038
0.0898998
0.0764392
0.249946
0.395593
0.181363
0.0398097
Cell-nucleous Eccentricity2
0
0.0249349
0.0732498
0.132658
0.168388
0.0865781
0.0972498
0.159927
0.111302
0.163667
0.0461647
0.0163588
0.0830552
0.045767
0.0323351
0.0413272
0.0866637
0.117807
0.0872857
0.0269245
Cell-nucleous Eccentricity3
0
0.0401595
0.0531916
0.0866672
0.142908
0.0735117
0.116182
0.115465
0.0981984
0.184891
0.0497785
0.0274703
0.107489
0.0265094
0.0523205
0.0316467
0.133367
0.173902
0.0940832
0.0228456
Cell-nucleous Eccentricity4
0
0.0191608
0.036437
0.0701782
0.0871067
0.0532434
0.0592785
0.10046
0.0617956
0.0996693
0.0349603
0.0130687
0.0527472
0.0170038
0.0247638
0.0186956
0.062571
0.0761359
0.0496566
0.0216365