Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 954
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1030005040200020000000-206
954
Eyeball:Pigment cell:Human
Location
Eyeball
Age
65
Sex
Female
Race
Japanese
Disease
Orbital sebaceous carcinoma
Cause Of Death
-
Date
2014.02.24
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
463
1031
Area ratio
2.22678
Circularity
0.744094
0.40658
Eccentricity1
0.0559905
Convex area
514
1323
Eccentricity2
0.030077
Bending energy
0.552632
2.18421
Eccentricity3
0.0404332
Elliptic long axis
33.248
55.6456
Eccentricity3
0.0404332
Inertia moment
41767.4
254659
Eccentricity4
0.0179709
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
2
Ectodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030005040200020000000
206
Head
Eye
Eyeball
Uvea (tunica vasculosa bulbi)
Ciliary body
Ciliary muscle
Pigment cell
CL:0000149
936
,
937
,
938
,
939
,
950
,
951
,
952
,
953
,
954
,
955
Image
SHOGoiN Cell Id
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
1030005040200020000000-206
Image Id
936
937
938
939
950
951
952
953
954
955
Tissue
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Cell Type
Pigment cell
Pigment cell
Pigment cell
Pigment cell
Pigment cell
Pigment cell
Pigment cell
Pigment cell
Pigment cell
Pigment cell
Organism
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Eyeball
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
65
65
65
65
65
65
65
65
65
65
Sex
Female
Female
Female
Female
Female
Female
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
1200
1200
1200
1200
1200
1200
Resolution
72
72
72
72
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
2277
3398
2450.5
1478.5
2131.5
1534
1330.5
1730.5
1031
1242
Nucleous Circularity
0.48483
0.434293
0.357915
0.368003
0.385296
0.439289
0.42978
0.35974
0.40658
0.394138
Nucleous Bending
1.5
3.20149
2.61847
3.57219
2.66968
1.86517
4.65868
3.35885
2.18421
2.76471
Nucleous Convex Area
2640
3986
3231
1857
2531
1889
1605
2280
1323
1658
Nucleous Ellipse Long Axis
90.4512
99.7277
63.3805
47.7705
76.8079
68.3899
63.0595
68.6815
55.6456
50.1513
Nucleous Inertia
1.34E+06
2.59E+06
1.04E+06
366879
990118
549363
416135
707693
254659
285725
Cell Area
774.5
689.5
870.5
862
1041.5
703.5
438.5
332
463
191.5
Cell Circularity
0.548936
0.541227
0.874542
0.888326
0.5584
0.608565
0.733588
0.833021
0.744094
0.823992
Cell Bending
0.923077
1.1453
1.41414
0.326531
0.645669
1.17117
1.34247
1.36667
0.552632
0.553191
Cell Convex Area
861
777
936
922
1137
771
485
368
514
220
Cell Ellipse Long Axis
54.4783
58.8096
37.0058
36.744
65.1756
54.1642
32.567
24.5087
33.248
19.3162
Cell Inertia
164134
151630
123818
121789
306258
137201
37662.6
18781.7
41767.4
6421.95
Cell-nucleous Area Ratio
2.93996
4.92821
2.81505
1.7152
2.04657
2.18053
3.03421
5.21235
2.22678
6.48564
Cell-nucleous Eccentricity1
0.173532
0.801662
0.074567
0.0334353
0.0476168
0.301098
0.497473
0.244452
0.0559905
0.872258
Cell-nucleous Eccentricity2
0.0580466
0.210328
0.0604247
0.0272154
0.0153432
0.09414
0.264142
0.173107
0.030077
0.571819
Cell-nucleous Eccentricity3
0.0961675
0.28042
0.0431405
0.0245788
0.027811
0.17173
0.311511
0.12796
0.0404332
0.326959
Cell-nucleous Eccentricity4
0.0349611
0.124031
0.03528
0.0209334
0.0130195
0.0745581
0.136416
0.0617727
0.0179709
0.220241