Image : Cell Image ID 976

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

1030005040203010000000-258

976

Eyeball:Vascular endothelial cell:Human

Location	Eyeball
Age	65
Sex	Female
Race	Japanese
Disease	Orbital sebaceous carcinoma
Cause Of Death	-
Date	2014.02.24
Condition

Embedding Mehtod	Paraffin
Staining Mehtod	Hematoxylin
Microscope	OLYMPUS DX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	402	859	Area ratio	2.13682
Circularity	0.875957	0.398861	Eccentricity1	0.155402
Convex area	441	1130	Eccentricity2	0.125293
Bending energy	0.484848	3.84058	Eccentricity3	0.105369
Elliptic long axis	25.239	42.1516	Eccentricity3	0.105369
Inertia moment	26434.1	139771	Eccentricity4	0.0750214

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	4 Mesodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	1030005040203010000000	258	Head	Eye		Eyeball	Uvea (tunica vasculosa bulbi)	Ciliary body	Pars plicata	Ciliary process				Vascular endothelial cell		CL:0002139		975, 976, 1011, 1012, 1013, 1014, 1037, 1038, 1039, 1058

Image

SHOGoiN Cell Id	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258	1030005040203010000000-258
Image Id	975	976	1011	1012	1013	1014	1037	1038	1039	1058	1059	1077	1078	1079	1080	1090	1105	1106	1121	1122	1123
Tissue	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Ciliary process	Ciliary process	Ciliary process	Ciliary process	Ciliary process	Ciliary process	Ciliary process	Ciliary process	Ciliary process	Ciliary process	Ciliary process
Cell Type	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell	Vascular endothelial cell
Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball	Eyeball
Karyotype
Race	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age	65	65	65	65	65	65	65	65	65	65	65	65	65	65	65	65	65	65	65	65	65
Sex	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female	Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma
Cod
Shooting Date	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24	2014.02.24
Shooting Condition
Embedding	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin
Staining	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin
Microscope	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50
Camera	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600	1600
Image Size Y	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200	1200
Resolution	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72	72
Magnification	400	400	400	400	400	400	400	400	400	400
Contact Person	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	1505	859	1862	1010.5	1187	857	6156	2036.5	1208	3668.5	860.5	2284.5	1022.5	1257	1398	1207.5	1369.5	1177	1566.5	1108	1998
Nucleous Circularity	0.465889	0.398861	0.330075	0.403321	0.245302	0.438525	0.461442	0.327345	0.417634	0.434827	0.321351	0.458043	0.387629	0.361147	0.334601	0.324178	0.449905	0.263914	0.224971	0.26361	0.362774
Nucleous Bending	2.41176	3.84058	3.34821	1.73856	4.82524	4.38235	3.45349	2.43172	3.975	3.80952	4.07547	2.08531	3.19205	3.79545	2.46939	2.37288	2.92216	2.6875	3.37349	3.78	2.62727
Nucleous Convex Area	1829	1130	2482	1289	1806	1136	7110	2735	1467	4496	1265	2715	1280	1704	1930	1774	1678	1592	2213	1532	2700
Nucleous Ellipse Long Axis	53.9684	42.1516	62.7529	46.846	62.1897	46.6158	99.5863	86.1145	56.104	89.4108	52.7139	65.4553	54.8561	54.6383	72.2562	60.5469	55.4343	76.8296	75.793	63.6072	76.4518
Nucleous Inertia	399111	139771	695331	195665	353898	158427	6.40E+06	1.23E+06	306444	2.60E+06	199730	946564	235248	334563	552731	375020	355240	491428	682778	320119	929109
Cell Area	547.5	402	398	374.5	532	314	607	726	825.5	468	590	571	229.5	389	418	314	475.5	483.5	618	458.5	825.5
Cell Circularity	0.824379	0.875957	0.682601	0.874579	0.782583	0.721719	0.817953	0.44922	0.652118	0.865613	0.622748	0.798931	0.486267	0.81182	0.376713	0.787857	0.713745	0.493545	0.583191	0.593527	0.49371
Cell Bending	0.419753	0.484848	4.48649	0.444444	1.175	1.25	2.225	0.706897	2.53333	1.88571	1.78	0.5	0.830769	0.515152	0.634615	0.566667	1.97403	0.629213	1.63265	3.64045	2.2439
Cell Convex Area	592	441	449	408	585	356	651	814	899	510	659	625	270	429	498	352	529	549	682	522	911
Cell Ellipse Long Axis	34.1225	25.239	33.8049	23.3319	32.9438	26.4831	36.9208	61.2054	49.2575	27.6889	47.0299	34.631	34.1741	28.3442	52.3379	26.601	33.5446	48.4437	47.9947	40.5885	60.4941
Cell Inertia	54469.7	26434.1	34608.4	22960.7	50908.5	19062.8	68280.9	183267	151644	36293.5	90276.7	59024.9	17487.1	27177.8	74936	18410.3	44293.4	77206.3	99111.4	54021.2	207870
Cell-nucleous Area Ratio	2.74886	2.13682	4.67839	2.69826	2.2312	2.7293	10.1417	2.8051	1.46336	7.83868	1.45847	4.00088	4.45534	3.23136	3.3445	3.84554	2.88013	2.43433	2.53479	2.41658	2.42035
Cell-nucleous Eccentricity1	0.0975306	0.155402	0.209274	0.0681447	0.1981	0.37402	0.78947	0.270675	0.0908177	0.453962	0.192699	0.242257	0.252416	0.235275	0.135447	0.066296	0.231006	0.156096	0.0599287	0.199614	0.527154
Cell-nucleous Eccentricity2	0.0586123	0.125293	0.093545	0.0606128	0.125156	0.220176	0.450785	0.067365	0.0406029	0.355697	0.0672398	0.147239	0.0654316	0.145465	0.0270208	0.0375925	0.126478	0.041285	0.0208356	0.0739126	0.156823
Cell-nucleous Eccentricity3	0.0544277	0.105369	0.0783009	0.0455696	0.148323	0.225164	0.206211	0.12423	0.0700693	0.179512	0.140399	0.112267	0.0923511	0.131359	0.0525559	0.0334857	0.128723	0.0973665	0.0342405	0.118358	0.267078
Cell-nucleous Eccentricity4	0.0370587	0.0750214	0.0503926	0.0301886	0.0662988	0.125085	0.167125	0.0478793	0.0356481	0.110153	0.0599894	0.0779008	0.0407624	0.0754618	0.0195722	0.0165161	0.0765346	0.0260316	0.0131938	0.0471645	0.124089