Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 979
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
1030005040203010000000-120
979
Eyeball:Fibroblast:Human
Location
Eyeball
Age
65
Sex
Female
Race
Japanese
Disease
Orbital sebaceous carcinoma
Cause Of Death
-
Date
2014.02.24
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
931.5
2529
Area ratio
2.71498
Circularity
0.788514
0.472224
Eccentricity1
0.167168
Convex area
1008
3061
Eccentricity2
0.100416
Bending energy
3.54128
2.41284
Eccentricity3
0.092111
Elliptic long axis
44.5363
68.5612
Eccentricity3
0.092111
Inertia moment
157917
1.12E+06
Eccentricity4
0.0652284
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
4
Mesodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
1030005040203010000000
120
Head
Eye
Eyeball
Uvea (tunica vasculosa bulbi)
Ciliary body
Pars plicata
Ciliary process
Fibroblast
CL:0000057
977
,
978
,
979
,
1015
Image
SHOGoiN Cell Id
1030005040203010000000-120
1030005040203010000000-120
1030005040203010000000-120
1030005040203010000000-120
Image Id
977
978
979
1015
Tissue
Eyeball
Eyeball
Eyeball
Eyeball
Cell Type
Fibroblast
Fibroblast
Fibroblast
Fibroblast
Organism
Human
Human
Human
Human
Cell Strain
Location
Eyeball
Eyeball
Eyeball
Eyeball
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Age
65
65
65
65
Sex
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2014.02.24
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
Image Size Y
1200
1200
1200
1200
Resolution
72
72
72
72
Magnification
400
400
400
400
Contact Person
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
663-8501
663-8501
663-8501
663-8501
Address
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Note
Nucleous Area
3574.5
2177
2529
1565
Nucleous Circularity
0.509306
0.342711
0.472224
0.390376
Nucleous Bending
2.07171
3.78448
2.41284
1.90426
Nucleous Convex Area
4262
2716
3061
1992
Nucleous Ellipse Long Axis
84.6753
95.3561
68.5612
71.8866
Nucleous Inertia
2.40E+06
1.48E+06
1.12E+06
645426
Cell Area
1286.5
488.5
931.5
442.5
Cell Circularity
0.823361
0.620085
0.788514
0.669221
Cell Bending
1.34454
0.588235
3.54128
0.48
Cell Convex Area
1364
547
1008
491
Cell Ellipse Long Axis
50.7361
41.4892
44.5363
37.478
Cell Inertia
291991
60075.7
157917
46008.2
Cell-nucleous Area Ratio
2.77847
4.4565
2.71498
3.53672
Cell-nucleous Eccentricity1
0.314482
1.27775
0.167168
0.38351
Cell-nucleous Eccentricity2
0.201002
0.465499
0.100416
0.155583
Cell-nucleous Eccentricity3
0.183392
0.637843
0.092111
0.197493
Cell-nucleous Eccentricity4
0.120437
0.202538
0.0652284
0.0811133