Image : Cell Image ID 983

No.

SHOGoiN cell id

Image (Image ID)

Title

Sample

Method

Contact

Morphologic Feature

Note

8010000000000000000000-014

983

Immune system (blood):Red blood cell:Human

Location	Immune system
Age	65
Sex	Female
Race	Japanese
Disease	Orbital sebaceous carcinoma
Cause Of Death	-
Date	2014.02.24
Condition

Embedding Mehtod	Paraffin
Staining Mehtod	Hematoxylin
Microscope	OLYMPUS DX50
Camera	OLYMPUS DP20
Image Size (pixels)	1200x1600
Resolution (ppi)	72
magnification	400

Person	Koji Yamanegi
E-mail	yamanegi@hyo-med.ac.jp
Telephone	0798-45-6432
Fax	0798-45-6431
Affiliation	Department of clinical pathology, Hyogo collage of medicine
Address	1-1, Mukogawa, Nishinomiya, Hyogo

	Cell	Nucleus		Nucleus/Cell
Area	708	988	Area ratio	1.39548
Circularity	0.873698	0.598544	Eccentricity1	0.0497463
Convex area	758	1135	Eccentricity2	0.0441067
Bending energy	0.488372	3.33333	Eccentricity3	0.0431486
Elliptic long axis	32.0635	39.1723	Eccentricity3	0.0431486
Inertia moment	81533.2	161015	Eccentricity4	0.0361024

SHOGoiN Cell Taxonomy

No.	Germ Layer	Differentiation State	Source Age	Anatomy Id	Cell Type Id	Anatomy:body Part	Anatomy:organ	Anatomy:sub-organ	Anatomy:tissue 1	Anatomy:tissue 2	Anatomy:tissue 3	Anatomy:tissue 4	Anatomy:tissue 5-1	Anatomy:tissue 5-2	Anatomy:tissue 5-3	Anatomy:tissue 5-4	Cell Type	Synonym	CL Id	UBERON Id	Image Id	Tissue Image ID
1	4 Mesodermal	4 Terminally differentiated	6 Fetus state 7 Postnatal state 8 Neonatal state 9 Infant state 10 Juvenile 11 Adult	8010000000000000000000	014	Immune system class	Blood										Red blood cell (erythrocyte)		CL:0000232		56, 571, 584, 982, 983, 984, 985

SHOGoiN Cell Marker

Cell Type Name	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell	Immune system/blood cell
Cell Type Subclass	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)	Red blood cell (erythrocyte)
SHOGoiN Cell Id	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014
Anatomical Location	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood	Blood
Marker Molecule:name	Glycophorin-A (MN sialoglycoprotein, PAS-2, CD235a)	Thy-1 membrane glycoprotein (CDw90, Thy-1 antigen, CD90)	Complement receptor type 1 (C3b/C4b receptor, CD35, CR1, C3BR)	Platelet glycoprotein 4 (Fatty acid translocase, FAT, Glycoprotein IIIb, GPIIIB, Leukocyte differentiation antigen CD36, PAS IV, PAS-4, Platelet collagen receptor, Platelet glycoprotein IV, GPIV, Thro	CD44 antigen (CDw44, Epican, Extracellular matrix receptor III, ECMR-III, GP90 lymphocyte homing/adhesion receptor, HUTCH-I, Heparan sulfate proteoglycan, Hermes antigen, Hyaluronate receptor, Phagocy	Leukocyte surface antigen CD47 (Antigenic surface determinant protein OA3, Integrin-associated protein, IAP, Protein MER6, CD47, CD47, MER6)	Integrin alpha-5 (CD49 antigen-like family member E, Fibronectin receptor subunit alpha, Integrin alpha-F, VLA-5, CD49e, TGA5, FNRA)	Complement decay-accelerating factor (CD55, CD55, CR, DAF)	Lymphocyte function-associated antigen 3 (Ag3, Surface glycoprotein LFA-3, CD58, CD58, LFA3)	CD59 glycoprotein (1F5 antigen, 20 kDa homologous restriction factor, HRF-20, HRF20, MAC-inhibitory protein, MAC-IP, MEM43 antigen, Membrane attack complex inhibition factor, MACIF, Membrane inhibitor	Beta-galactoside alpha-2,6-sialyltransferase 1 (Alpha 2,6-ST 1, B-cell antigen CD75, CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 1, ST6Gal I, ST6GalI, Sialyltransferase 1, S	CD75S	CD99 antigen (12E7, E2 antigen, Protein MIC2, T-cell surface glycoprotein E2, CD99, CD99, MIC2, MIC2X, MIC2Y)	Nectin-1 (Herpes virus entry mediator C, Herpesvirus entry mediator C, HveC, Herpesvirus Ig-like receptor, HIgR, Nectin cell adhesion molecule 1, Poliovirus receptor-related protein 1, CD111, NECTIN1,	CD139 (Uniprot none)	Basigin (5F7, Collagenase stimulatory factor, Extracellular matrix metalloproteinase inducer, EMMPRIN, Leukocyte, activation antigen M6, OK blood group antigen, Tumor cell-derived collagenase stimulat	CD173	CD176	Band 3 anion transport protein (Anion exchange protein 1, AE 1, Anion exchanger 1, Solute carrier family 4 member 1, CD233, SLC4A1, AE1, DI, EPB3)	Atypical chemokine receptor 1 (Duffy antigen/chemokine receptor, Fy glycoprotein, GpFy, Glycoprotein D, Plasmodium vivax receptor, CD234, ACKR1, DARC, FY, GPD)	Glycophorin-B (PAS-3, SS-active sialoglycoprotein, Sialoglycoprotein delta, CD235b, GYPB, GPB)	Glycophorin-C (Glycoconnectin, Glycophorin-D, GPD, Glycoprotein beta, PAS-2', Sialoglycoprotein D, CD236, GYPC, GLPC, GPC)	CD236R	Kell blood group glycoprotein (CD238, KEL)	Basal cell adhesion molecule (Auberger B antigen, B-CAM cell surface glycoprotein, F8/G253 antigen, Lutheran antigen, Lutheran blood group glycoprotein, CD239, BCAM, LU, MSK19)	CD240	Ammonium transporter Rh type A (Erythrocyte membrane glycoprotein Rh50, Erythrocyte plasma membrane 50 kDa glycoprotein, Rh50A, Rhesus blood group family type A glycoprotein, Rh family type A glycopro	Intercellular adhesion molecule 4 (ICAM-4, Landsteiner-Wiener blood group glycoprotein, LW blood group protein, CD242, ICAM4, LW)	Junctional adhesion molecule A (JAM-A, Junctional adhesion molecule 1, JAM-1, Platelet F11 receptor, Platelet adhesion molecule 1, PAM-1, CD321, F11R, JAM1, JCAM)	Cadherin-1 (CAM 120/80, Epithelial cadherin, E-cadherin, Uvomorulin, CD324, CDH1, CDHE, UVO)
Marker Molecule:type	Protein	Protein	Protein	Protein	Protein	Protein	Protein	Protein	Protein		Protein
Marker Molecule:category	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule	CD molecule
Subcellular Localization	Plasma membrane	Plasma membrane	Plasma membrane	Plasma membrane	Plasma membrane	Plasma membrane	Plasma membrane	Plasma membrane		Plasma membrane, Secreted	Secreted, Golgi apparatus		Plasma membrane	Cytosol		Plasma membrane, Melanosome			Plasma membrane	Plasma membrane	Plasma membrane	Plasma membrane		Plasma membrane	Plasma membrane		Plasma membrane	Cytosol	Plasma membrane	Plasma membrane, Golgi apparatus
Uniprot Id	P02724	P04216	P17927	P16671	P16070	Q08722	P08648	P08174	P19256	P13987	P15907		P14209	Q15223		P35613			P02730	Q16570	P06028	P04921		P23276	P50895		Q02094	Q14773	Q9Y624	P12830
Gene Id			1378	948	960	961	3678	1604	965	966	6480		4267	5818		682			6521	2532	2994	2995		3792	4059		6005	3386	50848	999
Source Organism	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human	Human
Reference	http://www.miltenyibiotec.com/en/products-and-services/macs-cell-separation/cell-separation-reagents/various-cell-types/cd235a-glycophorin-a-microbeads-human.aspx	PMID:27465541	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	http://www.ebioscience.com/resources/human-cd-chart.htm	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf	https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf

Image

SHOGoiN Cell Id	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014	8010000000000000000000-014
Image Id	56	571	584	982	983	984	985
Tissue	Bone	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)	Immune system (blood)
Cell Type	Red blood cell	Red blood cell	Red blood cell	Red blood cell	Red blood cell	Red blood cell	Red blood cell
Organism	Human	Human	Human	Human	Human	Human	Human
Cell Strain
Location	Bone	Immune system	Immune system	Immune system	Immune system	Immune system	Immune system
Karyotype
Race		Japanese	Japanese	Japanese	Japanese	Japanese	Japanese
Age		79	79	65	65	65	65
Sex		Female	Female	Female	Female	Female	Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease		Ascending colon cancer	Ascending colon cancer	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma	Orbital sebaceous carcinoma
Cod
Shooting Date	2005.8.12	2013.08.01	2013.08.01	2014.02.24	2014.02.24	2014.02.24	2014.02.24
Shooting Condition
Embedding		Paraffin	Paraffin	Paraffin	Paraffin	Paraffin	Paraffin
Staining		Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin	Hematoxylin
Microscope		OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50	OLYMPUS DX50
Camera		OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20	OLYMPUS DP20
Image Size X		1600	1600	1600	1600	1600	1600
Image Size Y	1392	1200	1200	1200	1200	1200	1200
Resolution	1040	72	72	72	72	72	72
Magnification		400	400	400	400	400	400
Contact Person	Takayuki Masuda	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi	Koji Yamanegi
Email	masudat@mail.tains.tohoku.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp	yamanegi@hyo-med.ac.jp
Telephone		0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432	0798-45-6432
Fax		0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431	0798-45-6431
Affiliation	Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine	Department of clinical pathology, Hyogo collage of medicine
Zip Code	980-8575	663-8501	663-8501	663-8501	663-8501	663-8501	663-8501
Address	2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo	1-1, Mukogawa, Nishinomiya, Hyogo
Country	Japan	Japan	Japan	Japan	Japan	Japan	Japan
Note
Nucleous Area	741.5	1085.5	960.5	565.5	988	469	585.5
Nucleous Circularity	0.9	0.570643	0.328855	0.765874	0.598544	0.677706	0.340705
Nucleous Bending	790	3.58779	4.39264	3.62963	3.33333	3.2	4.48
Nucleous Convex Area	88778.4	1266	1350	637	1135	548	811
Nucleous Ellipse Long Axis	31.65	37.9641	45.5422	27.9351	39.1723	30.1167	32.5841
Nucleous Inertia	0.35	189570	190669	51513.5	161015	39212.3	62295.7
Cell Area	1872.5	382.5	278	295.5	708	371	355
Cell Circularity	0.64	0.893262	0.786955	0.802082	0.873698	0.791055	0.834552
Cell Bending	1.91	0.444444	1.23333	0.491803	0.488372	4.21212	2.0625
Cell Convex Area	2097	418	311	337	758	412	395
Cell Ellipse Long Axis	49.65	23.4751	25.6488	21.5901	32.0635	27.8692	26.4512
Cell Inertia	564648	23628.7	14777.1	14581.1	81533.2	24859.2	22050.9
Cell-nucleous Area Ratio	0.4	2.83791	3.45504	1.91371	1.39548	1.26415	1.6493
Cell-nucleous Eccentricity1	0.05	0.151429	0.523723	0	0.0497463	0.0587801	0.0582838
Cell-nucleous Eccentricity2	0.05	0.134708	0.283838	0	0.0441067	0.0358819	0.0378055
Cell-nucleous Eccentricity3	0.07	0.0856288	0.259474	0	0.0431486	0.0499272	0.0411793
Cell-nucleous Eccentricity4	0.07	0.0832965	0.159854	0	0.0361024	0.0332042	0.0306898