Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
Image : Cell Image ID 983
No.
SHOGoiN cell id
Image (Image ID)
Title
Sample
Method
Contact
Morphologic Feature
Note
1
8010000000000000000000-014
983
Immune system (blood):Red blood cell:Human
Location
Immune system
Age
65
Sex
Female
Race
Japanese
Disease
Orbital sebaceous carcinoma
Cause Of Death
-
Date
2014.02.24
Condition
Embedding Mehtod
Paraffin
Staining Mehtod
Hematoxylin
Microscope
OLYMPUS DX50
Camera
OLYMPUS DP20
Image Size (pixels)
1200x1600
Resolution (ppi)
72
magnification
400
Person
Koji Yamanegi
E-mail
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
Fax
0798-45-6431
Affiliation
Department of clinical pathology, Hyogo collage of medicine
Address
1-1, Mukogawa, Nishinomiya, Hyogo
Cell
Nucleus
Nucleus/Cell
Area
708
988
Area ratio
1.39548
Circularity
0.873698
0.598544
Eccentricity1
0.0497463
Convex area
758
1135
Eccentricity2
0.0441067
Bending energy
0.488372
3.33333
Eccentricity3
0.0431486
Elliptic long axis
32.0635
39.1723
Eccentricity3
0.0431486
Inertia moment
81533.2
161015
Eccentricity4
0.0361024
SHOGoiN Cell Taxonomy
Homo sapiens
&
Mus musculus
cell
Differentiated (1)
Stem (0)
Embryo (0)
No.
Germ Layer
Differentiation State
Source Age
Anatomy Id
Cell Type Id
Anatomy:body Part
Anatomy:organ
Anatomy:sub-organ
Anatomy:tissue 1
Anatomy:tissue 2
Anatomy:tissue 3
Anatomy:tissue 4
Anatomy:tissue 5-1
Anatomy:tissue 5-2
Anatomy:tissue 5-3
Anatomy:tissue 5-4
Cell Type
Synonym
CL Id
UBERON Id
Image Id
Tissue Image ID
1
4
Mesodermal
4
Terminally differentiated
6
Fetus
7
Postnatal
8
Neonatal
9
Infant
10
Juvenile
11
Adult
8010000000000000000000
014
Immune system class
Blood
Red blood cell (erythrocyte)
CL:0000232
56
,
571
,
584
,
982
,
983
,
984
,
985
SHOGoiN Cell Marker
Cell Type Name
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Immune system/blood cell
Cell Type Subclass
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
Red blood cell (erythrocyte)
SHOGoiN Cell Id
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
Anatomical Location
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Blood
Marker Molecule:name
Glycophorin-A (MN sialoglycoprotein, PAS-2, CD235a)
Thy-1 membrane glycoprotein (CDw90, Thy-1 antigen, CD90)
Complement receptor type 1 (C3b/C4b receptor, CD35, CR1, C3BR)
Platelet glycoprotein 4 (Fatty acid translocase, FAT, Glycoprotein IIIb, GPIIIB, Leukocyte differentiation antigen CD36, PAS IV, PAS-4, Platelet collagen receptor, Platelet glycoprotein IV, GPIV, Thro
CD44 antigen (CDw44, Epican, Extracellular matrix receptor III, ECMR-III, GP90 lymphocyte homing/adhesion receptor, HUTCH-I, Heparan sulfate proteoglycan, Hermes antigen, Hyaluronate receptor, Phagocy
Leukocyte surface antigen CD47 (Antigenic surface determinant protein OA3, Integrin-associated protein, IAP, Protein MER6, CD47, CD47, MER6)
Integrin alpha-5 (CD49 antigen-like family member E, Fibronectin receptor subunit alpha, Integrin alpha-F, VLA-5, CD49e, TGA5, FNRA)
Complement decay-accelerating factor (CD55, CD55, CR, DAF)
Lymphocyte function-associated antigen 3 (Ag3, Surface glycoprotein LFA-3, CD58, CD58, LFA3)
CD59 glycoprotein (1F5 antigen, 20 kDa homologous restriction factor, HRF-20, HRF20, MAC-inhibitory protein, MAC-IP, MEM43 antigen, Membrane attack complex inhibition factor, MACIF, Membrane inhibitor
Beta-galactoside alpha-2,6-sialyltransferase 1 (Alpha 2,6-ST 1, B-cell antigen CD75, CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 1, ST6Gal I, ST6GalI, Sialyltransferase 1, S
CD75S
CD99 antigen (12E7, E2 antigen, Protein MIC2, T-cell surface glycoprotein E2, CD99, CD99, MIC2, MIC2X, MIC2Y)
Nectin-1 (Herpes virus entry mediator C, Herpesvirus entry mediator C, HveC, Herpesvirus Ig-like receptor, HIgR, Nectin cell adhesion molecule 1, Poliovirus receptor-related protein 1, CD111, NECTIN1,
CD139 (Uniprot none)
Basigin (5F7, Collagenase stimulatory factor, Extracellular matrix metalloproteinase inducer, EMMPRIN, Leukocyte, activation antigen M6, OK blood group antigen, Tumor cell-derived collagenase stimulat
CD173
CD176
Band 3 anion transport protein (Anion exchange protein 1, AE 1, Anion exchanger 1, Solute carrier family 4 member 1, CD233, SLC4A1, AE1, DI, EPB3)
Atypical chemokine receptor 1 (Duffy antigen/chemokine receptor, Fy glycoprotein, GpFy, Glycoprotein D, Plasmodium vivax receptor, CD234, ACKR1, DARC, FY, GPD)
Glycophorin-B (PAS-3, SS-active sialoglycoprotein, Sialoglycoprotein delta, CD235b, GYPB, GPB)
Glycophorin-C (Glycoconnectin, Glycophorin-D, GPD, Glycoprotein beta, PAS-2', Sialoglycoprotein D, CD236, GYPC, GLPC, GPC)
CD236R
Kell blood group glycoprotein (CD238, KEL)
Basal cell adhesion molecule (Auberger B antigen, B-CAM cell surface glycoprotein, F8/G253 antigen, Lutheran antigen, Lutheran blood group glycoprotein, CD239, BCAM, LU, MSK19)
CD240
Ammonium transporter Rh type A (Erythrocyte membrane glycoprotein Rh50, Erythrocyte plasma membrane 50 kDa glycoprotein, Rh50A, Rhesus blood group family type A glycoprotein, Rh family type A glycopro
Intercellular adhesion molecule 4 (ICAM-4, Landsteiner-Wiener blood group glycoprotein, LW blood group protein, CD242, ICAM4, LW)
Junctional adhesion molecule A (JAM-A, Junctional adhesion molecule 1, JAM-1, Platelet F11 receptor, Platelet adhesion molecule 1, PAM-1, CD321, F11R, JAM1, JCAM)
Cadherin-1 (CAM 120/80, Epithelial cadherin, E-cadherin, Uvomorulin, CD324, CDH1, CDHE, UVO)
Marker Molecule:type
Protein
Protein
Protein
Protein
Protein
Protein
Protein
Protein
Protein
Protein
Marker Molecule:category
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
CD molecule
Subcellular Localization
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane, Secreted
Secreted, Golgi apparatus
Plasma membrane
Cytosol
Plasma membrane, Melanosome
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Plasma membrane
Cytosol
Plasma membrane
Plasma membrane, Golgi apparatus
Uniprot Id
P02724
P04216
P17927
P16671
P16070
Q08722
P08648
P08174
P19256
P13987
P15907
P14209
Q15223
P35613
P02730
Q16570
P06028
P04921
P23276
P50895
Q02094
Q14773
Q9Y624
P12830
Gene Id
1378
948
960
961
3678
1604
965
966
6480
4267
5818
682
6521
2532
2994
2995
3792
4059
6005
3386
50848
999
Source Organism
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Human
Reference
http://www.miltenyibiotec.com/en/products-and-services/macs-cell-separation/cell-separation-reagents/various-cell-types/cd235a-glycophorin-a-microbeads-human.aspx
PMID:27465541
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
http://www.ebioscience.com/resources/human-cd-chart.htm
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
https://www.bdbiosciences.com/documents/cd_marker_handbook.pdf
Image
SHOGoiN Cell Id
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
8010000000000000000000-014
Image Id
56
571
584
982
983
984
985
Tissue
Bone
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Immune system (blood)
Cell Type
Red blood cell
Red blood cell
Red blood cell
Red blood cell
Red blood cell
Red blood cell
Red blood cell
Organism
Human
Human
Human
Human
Human
Human
Human
Cell Strain
Location
Bone
Immune system
Immune system
Immune system
Immune system
Immune system
Immune system
Karyotype
Race
Japanese
Japanese
Japanese
Japanese
Japanese
Japanese
Age
79
79
65
65
65
65
Sex
Female
Female
Female
Female
Female
Female
Medium
Serum
Other Chemical
Feeder
Other Treatment
Culture Period
Differentiaion
Self Renewal Ability
Onocogenic Transformation
Knock Out Gene
Knock In Gene
Disease
Ascending colon cancer
Ascending colon cancer
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Orbital sebaceous carcinoma
Cod
Shooting Date
2005.8.12
2013.08.01
2013.08.01
2014.02.24
2014.02.24
2014.02.24
2014.02.24
Shooting Condition
Embedding
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Paraffin
Staining
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Hematoxylin
Microscope
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
OLYMPUS DX50
Camera
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
OLYMPUS DP20
Image Size X
1600
1600
1600
1600
1600
1600
Image Size Y
1392
1200
1200
1200
1200
1200
1200
Resolution
1040
72
72
72
72
72
72
Magnification
400
400
400
400
400
400
Contact Person
Takayuki Masuda
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Koji Yamanegi
Email
masudat@mail.tains.tohoku.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
yamanegi@hyo-med.ac.jp
Telephone
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
0798-45-6432
Fax
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
0798-45-6431
Affiliation
Microbiology and Immunology, Department. of Medical Technology, School of Medicine, Tohoku University
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Department of clinical pathology, Hyogo collage of medicine
Zip Code
980-8575
663-8501
663-8501
663-8501
663-8501
663-8501
663-8501
Address
2-1, Seiryo-machi, Aoba-ku, Sendai, Miyagi
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
1-1, Mukogawa, Nishinomiya, Hyogo
Country
Japan
Japan
Japan
Japan
Japan
Japan
Japan
Note
Nucleous Area
741.5
1085.5
960.5
565.5
988
469
585.5
Nucleous Circularity
0.9
0.570643
0.328855
0.765874
0.598544
0.677706
0.340705
Nucleous Bending
790
3.58779
4.39264
3.62963
3.33333
3.2
4.48
Nucleous Convex Area
88778.4
1266
1350
637
1135
548
811
Nucleous Ellipse Long Axis
31.65
37.9641
45.5422
27.9351
39.1723
30.1167
32.5841
Nucleous Inertia
0.35
189570
190669
51513.5
161015
39212.3
62295.7
Cell Area
1872.5
382.5
278
295.5
708
371
355
Cell Circularity
0.64
0.893262
0.786955
0.802082
0.873698
0.791055
0.834552
Cell Bending
1.91
0.444444
1.23333
0.491803
0.488372
4.21212
2.0625
Cell Convex Area
2097
418
311
337
758
412
395
Cell Ellipse Long Axis
49.65
23.4751
25.6488
21.5901
32.0635
27.8692
26.4512
Cell Inertia
564648
23628.7
14777.1
14581.1
81533.2
24859.2
22050.9
Cell-nucleous Area Ratio
0.4
2.83791
3.45504
1.91371
1.39548
1.26415
1.6493
Cell-nucleous Eccentricity1
0.05
0.151429
0.523723
0
0.0497463
0.0587801
0.0582838
Cell-nucleous Eccentricity2
0.05
0.134708
0.283838
0
0.0441067
0.0358819
0.0378055
Cell-nucleous Eccentricity3
0.07
0.0856288
0.259474
0
0.0431486
0.0499272
0.0411793
Cell-nucleous Eccentricity4
0.07
0.0832965
0.159854
0
0.0361024
0.0332042
0.0306898