Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: Project ID SRP016010
No.
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Project Description
Project Submission Date
Organization Name
Stable Contact Information
Reference Submission Status
Reference Authors
Reference Title
Reference Pubmed Id
Assay Type
Assay Factor
Sample Id
SHOGoiN Cell Id
Source Cell Type
Source Organism
Race Or Strain
Age Or Stage
Source Tissue Or Organ
Source Cell Karyotype
Cell Lineage
Organism Genetic Information
Health Status
Source Providor
Assay Technology
Assay Detection Instrumentation
Assay Detection Instrument Vendor
Assesed Material
Source Cell Format
Source Cell Preparation Method
Source Cell Identidication Method
Source Cell Treatment
Data Id
Data Type
Data Processing Method
Data Processing Software And Version
Data Normalization Method
Data Normalization Software Name And Version
Data Analytical Software And Version
Reference Sequence Source
Genome Annotation Ref
1
GSM1015969
3070000080000000000000-144
Sequence Read Archive
SRP016010
SRP016010_M1
Single-cell DNA methylation analysis of epimutations in mouse liver cells.
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379
14-Oct-12
Max Planck Institute Cologne
Kemal Akman, kemal.akman@campus.lmu.de
Not published
Methylome
Single cell or pool
GSM1015969
3070000080000000000000-144
Hepatocyte
Mouse
C57BL/6
Liver
Bisulfite-Seq (RRBS)
HiSeq 2000
Illumina
Genomic DNA
Single cell, dissociated
SRR580569
Sequence
mm10
2
GSM1015970
3070000080000000000000-144
Sequence Read Archive
SRP016010
SRP016010_M2
Single-cell DNA methylation analysis of epimutations in mouse liver cells.
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379
14-Oct-12
Max Planck Institute Cologne
Kemal Akman, kemal.akman@campus.lmu.de
Not published
Methylome
Single cell or pool
GSM1015970
3070000080000000000000-144
Hepatocyte
Mouse
C57BL/6
Liver
Bisulfite-Seq (RRBS)
HiSeq 2000
Illumina
Genomic DNA
Single cell, dissociated
SRR580570
Sequence
mm10
3
GSM1015971
3070000080000000000000-144
Sequence Read Archive
SRP016010
SRP016010_M3
Single-cell DNA methylation analysis of epimutations in mouse liver cells.
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379
14-Oct-12
Max Planck Institute Cologne
Kemal Akman, kemal.akman@campus.lmu.de
Not published
Methylome
Single cell or pool
GSM1015971
3070000080000000000000-144
Hepatocyte
Mouse
C57BL/6
Liver
Bisulfite-Seq (RRBS)
HiSeq 2000
Illumina
Genomic DNA
Single cell, dissociated
SRR580571
Sequence
mm10
4
GSM1015972
3070000080000000000000-144
Sequence Read Archive
SRP016010
SRP016010_M4
Single-cell DNA methylation analysis of epimutations in mouse liver cells.
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41379
14-Oct-12
Max Planck Institute Cologne
Kemal Akman, kemal.akman@campus.lmu.de
Not published
Methylome
Single cell or pool
GSM1015972
3070000080000000000000-144
Hepatocyte
Mouse
C57BL/6
Liver
Bisulfite-Seq (RRBS)
HiSeq 2000
Illumina
Genomic DNA
Single cell, dissociated
SRR580572
Sequence
mm10