SHOGoiN Cell Methylome: Project ID SRP052901
| No. | Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||||||||||||||||||||||||||||||||||
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| Project Title | Project Description | Project Submission Date | Organization Name | Stable Contact Information | Reference Submission Status | Reference Authors | Reference Title | Reference Pubmed Id | Assay Type | Assay Factor | Sample Id | SHOGoiN Cell Id | Source Cell Type | Source Organism | Race Or Strain | Age Or Stage | Source Tissue Or Organ | Source Cell Karyotype | Cell Lineage | Organism Genetic Information | Health Status | Source Providor | Assay Technology | Assay Detection Instrumentation | Assay Detection Instrument Vendor | Assesed Material | Source Cell Format | Source Cell Preparation Method | Source Cell Identidication Method | Source Cell Treatment | Data Id | Data Type | Data Processing Method | Data Processing Software And Version | Data Normalization Method | Data Normalization Software Name And Version | Data Analytical Software And Version | Reference Sequence Source | Genome Annotation Ref | ||||||
| 1 |  GSM1900052-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M1 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900052-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544637 | Sequence | Bismark | mm9 | ||||||||||||||
| 2 |  GSM1900052-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M2 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900052-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544638 | Sequence | Bismark | mm9 | ||||||||||||||
| 3 |  GSM1900054-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M3 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900054-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544641 | Sequence | Bismark | mm9 | ||||||||||||||
| 4 |  GSM1900054-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M4 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900054-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544642 | Sequence | Bismark | mm9 | ||||||||||||||
| 5 |  GSM1900056-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M5 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900056-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544645 | Sequence | Bismark | mm9 | ||||||||||||||
| 6 |  GSM1900056-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M6 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900056-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544646 | Sequence | Bismark | mm9 | ||||||||||||||
| 7 |  GSM1900058-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M7 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900058-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544649 | Sequence | Bismark | mm9 | ||||||||||||||
| 8 |  GSM1900058-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M8 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900058-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544650 | Sequence | Bismark | mm9 | ||||||||||||||
| 9 |  GSM1900060-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M9 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900060-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544653 | Sequence | Bismark | mm9 | ||||||||||||||
| 10 |  GSM1900060-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M10 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900060-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544654 | Sequence | Bismark | mm9 | ||||||||||||||
| 11 |  GSM1900062-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M11 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900062-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544657 | Sequence | Bismark | mm9 | ||||||||||||||
| 12 |  GSM1900062-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M12 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900062-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS), Trio-seq | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544658 | Sequence | Bismark | mm9 | ||||||||||||||
| 13 |  GSM1900063-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M13 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900063-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544659 | Sequence | Bismark | mm9 | ||||||||||||||
| 14 |  GSM1900063-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M14 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900063-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544660 | Sequence | Bismark | mm9 | ||||||||||||||
| 15 |  GSM1900064-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M15 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900064-1 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544661 | Sequence | Bismark | mm9 | ||||||||||||||
| 16 |  GSM1900064-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP052901 | SRP052901_M16 | Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65364 | 28-Jan-15 | Peking University | Yu Hou | Published | Hou Y, Guo H, Cao C, Li X et al. | Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. | 26902283 | Methylome | Omics sequencing technique | GSM1900064-2 | 7020001000000000000000-715 | Embryonic stem cell | Mouse | 129SV (male) | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2500 | Illumina | Genomic DNA | Single cell, cultured (passage: 25-30) | SRR2544662 | Sequence | Bismark | mm9 | ||||||||||||||