Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1015970

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015970


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M2Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000022951 Rcan1 regulator of calcineurin 1 10.6147 0.0000
2 ENSMUSG00000031201 Brcc3 BRCA1/BRCA2-containing complex, subunit 3 6.7814 0.0000
3 ENSMUSG00000069785 Gm11444 predicted gene 11444 6.7279 0.0000
4 ENSMUSG00000026278 Bok BCL2-related ovarian killer 6.6273 0.0000
5 ENSMUSG00000001349 Cnn1 calponin 1 6.2738 0.0000
6 ENSMUSG00000103194 Gm37643 predicted gene, 37643 6.2577 0.0000
7 ENSMUSG00000098137 Gm21940 predicted gene, 21940 6.1085 0.0000
8 ENSMUSG00000039989 Cbx4 chromobox 4 6.0444 0.0000
10 ENSMUSG00000062105 Olfr183 olfactory receptor 183 5.8071 0.0000
47072 ENSMUSG00000111414 Gm18103 predicted gene, 18103 0.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000111423 Dppa5c developmental pluripotency associated 5C 0.0000 1.0000
47080 ENSMUSG00000111422 1700027J07Rik RIKEN cDNA 1700027J07 gene 0.0000 1.0000
47079 ENSMUSG00000111421 Gm47643 predicted gene, 47643 0.0000 1.0000
47078 ENSMUSG00000111420 Olfr927-ps1 olfactory receptor 927, pseudogene 1 0.0000 1.0000
47077 ENSMUSG00000111419 Gm47568 predicted gene, 47568 0.0000 1.0000
47076 ENSMUSG00000111418 Gm18016 predicted gene, 18016 0.0000 1.0000
47075 ENSMUSG00000111417 Gm47430 predicted gene, 47430 0.0000 1.0000
47074 ENSMUSG00000111416 Gm48331 predicted gene, 48331 0.0000 1.0000
47073 ENSMUSG00000111415 Gm39325 predicted gene, 39325 0.0000 1.0000
47072 ENSMUSG00000111414 Gm18103 predicted gene, 18103 0.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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