SHOGoiN Cell Methylome: GSM1015971

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015971


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M3Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000035133 Arhgap5 Rho GTPase activating protein 5 7.4009 0.0000
2 ENSMUSG00000095477 Gm25076 predicted gene, 25076 7.3750 0.0000
3 ENSMUSG00000022951 Rcan1 regulator of calcineurin 1 6.9542 0.0000
4 ENSMUSG00000054662 Ano9 anoctamin 9 6.2288 0.0000
5 ENSMUSG00000066877 Nck2 non-catalytic region of tyrosine kinase adaptor protein 2 6.0661 0.0000
6 ENSMUSG00000028857 Tmem222 transmembrane protein 222 5.9773 0.0000
7 ENSMUSG00000083241 Gm13259 predicted gene 13259 5.9773 0.0000
8 ENSMUSG00000052426 Gm9877 predicted gene 9877 5.7549 0.0000
9 ENSMUSG00000032333 Stoml1 stomatin-like 1 5.6147 0.0000
10 ENSMUSG00000036986 Pml promyelocytic leukemia 5.6147 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000019920 Lims1 LIM and senescent cell antigen-like domains 1 -2.0000 0.0877
50853 ENSMUSG00000019297 Nop9 NOP9 nucleolar protein -2.0000 0.0877
50852 ENSMUSG00000017843 Ppp2r5c protein phosphatase 2, regulatory subunit B', gamma -2.0000 0.0877
50851 ENSMUSG00000015305 Sash1 SAM and SH3 domain containing 1 -2.0000 0.0877
50850 ENSMUSG00000002332 Dhrs1 dehydrogenase/reductase (SDR family) member 1 -2.0000 0.0877
50849 ENSMUSG00000023106 Denr density-regulated protein -1.9932 0.0000
50848 ENSMUSG00000097540 1700037F24Rik RIKEN cDNA 1700037F24 gene -1.9534 0.0077
50847 ENSMUSG00000079330 Lemd1 LEM domain containing 1 -1.9534 0.0077
50846 ENSMUSG00000065435 Mir135b microRNA 135b -1.9534 0.0077
50845 ENSMUSG00000027134 Lpcat4 lysophosphatidylcholine acyltransferase 4 -1.9534 0.0069

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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