Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1015971

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1015971


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3070000080000000000000-144Sequence Read ArchiveSRP016010SRP016010_M3Single-cell DNA methylation analysis of epimutations in mouse liver cells.MethylomeHepatocyteMouseLiverBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000035133 Arhgap5 Rho GTPase activating protein 5 7.4009 0.0000
3 ENSMUSG00000022951 Rcan1 regulator of calcineurin 1 6.9542 0.0000
4 ENSMUSG00000054662 Ano9 anoctamin 9 6.2288 0.0000
5 ENSMUSG00000066877 Nck2 non-catalytic region of tyrosine kinase adaptor protein 2 6.0661 0.0000
6 ENSMUSG00000028857 Tmem222 transmembrane protein 222 5.9773 0.0000
7 ENSMUSG00000083241 Gm13259 predicted gene 13259 5.9773 0.0000
8 ENSMUSG00000052426 Gm9877 predicted gene 9877 5.7549 0.0000
9 ENSMUSG00000032333 Stoml1 stomatin-like 1 5.6147 0.0000
10 ENSMUSG00000036986 Pml promyelocytic leukemia 5.6147 0.0000
47072 ENSMUSG00000112364 4930503E24Rik RIKEN cDNA 4930503E24 gene 0.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000112375 Gm38560 predicted gene, 38560 0.0000 1.0000
47080 ENSMUSG00000112373 Gm18556 predicted gene, 18556 0.0000 1.0000
47079 ENSMUSG00000112372 Gm48779 predicted gene, 48779 0.0000 1.0000
47078 ENSMUSG00000112371 Gm7791 predicted gene 7791 0.0000 1.0000
47077 ENSMUSG00000112370 Gm48385 predicted gene, 48385 0.0000 1.0000
47076 ENSMUSG00000112369 Gm47911 predicted gene, 47911 0.0000 1.0000
47075 ENSMUSG00000112368 Gm49376 predicted gene, 49376 0.0000 1.0000
47074 ENSMUSG00000112366 C730027H18Rik RIKEN cDNA C730027H18 gene 0.0000 1.0000
47072 ENSMUSG00000112364 4930503E24Rik RIKEN cDNA 4930503E24 gene 0.0000 1.0000
10 ENSMUSG00000036986 Pml promyelocytic leukemia 5.6147 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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