Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1015972
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1015972
Profile download
3070000080000000000000-144
Sequence Read Archive
SRP016010
SRP016010_M4
Single-cell DNA methylation analysis of epimutations in mouse liver cells.
Methylome
Hepatocyte
Mouse
Liver
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000064289
Tank
TRAF family member-associated Nf-kappa B activator
6.3399
0.0000
2
ENSMUSG00000029028
Lrrc47
leucine rich repeat containing 47
5.4798
0.0000
3
ENSMUSG00000083241
Gm13259
predicted gene 13259
5.3923
0.0000
4
ENSMUSG00000069085
Dytn
dystrotelin
5.0018
0.0000
5
ENSMUSG00000105151
Gm43241
predicted gene 43241
4.8074
0.0002
6
ENSMUSG00000037535
1700021A07Rik
RIKEN cDNA 1700021A07 gene
4.6147
0.0000
7
ENSMUSG00000105055
Gm43079
predicted gene 43079
4.5236
0.0007
8
ENSMUSG00000086203
Gm13985
predicted gene 13985
4.3219
0.0019
9
ENSMUSG00000022905
Kpna1
karyopherin (importin) alpha 1
4.2089
0.0000
10
ENSMUSG00000086324
Gm15564
predicted gene 15564
4.2089
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000110217
Gm45408
predicted gene 45408
0.0000
1.0000
47080
ENSMUSG00000110216
Gm36325
predicted gene, 36325
0.0000
1.0000
47079
ENSMUSG00000110215
Gm45598
predicted gene 45598
0.0000
1.0000
47078
ENSMUSG00000110214
Gm45587
predicted gene 45587
0.0000
1.0000
47077
ENSMUSG00000110213
Gm45628
predicted gene 45628
0.0000
1.0000
47076
ENSMUSG00000110212
Gm35963
predicted gene, 35963
0.0000
1.0000
47075
ENSMUSG00000110211
Gm31294
predicted gene, 31294
0.0000
1.0000
47074
ENSMUSG00000110210
Gm33756
predicted gene, 33756
0.0000
1.0000
47073
ENSMUSG00000110209
Gm45868
predicted gene 45868
0.0000
1.0000
47072
ENSMUSG00000110208
Gm45442
predicted gene 45442
0.0000
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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