SHOGoiN Cell Methylome: GSM1147580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147580


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M1Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000064763 Gm23515 predicted gene, 23515 9.0821 0.0000
2 ENSMUSG00000099069 Mir8090 microRNA 8090 9.0768 0.0000
3 ENSMUSG00000074595 Wfdc6a WAP four-disulfide core domain 6A 8.6770 0.0000
4 ENSMUSG00000077257 Gm26080 predicted gene, 26080 8.4686 0.0000
5 ENSMUSG00000080542 Gm22710 predicted gene, 22710 8.4686 0.0000
6 ENSMUSG00000107722 2900060B14Rik RIKEN cDNA 2900060B14 gene 8.4686 0.0000
7 ENSMUSG00000066359 Tcl1b1 T cell leukemia/lymphoma 1B, 1 8.2715 0.0000
8 ENSMUSG00000089627 Gm16228 predicted gene 16228 8.2510 0.0000
9 ENSMUSG00000072722 Gm6588 predicted gene 6588 8.1816 0.0000
10 ENSMUSG00000109602 Gm31597 predicted gene, 31597 8.1749 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000038975 Rabggtb Rab geranylgeranyl transferase, b subunit -6.9323 0.0000
50853 ENSMUSG00000005493 Msh4 mutS homolog 4 -6.9323 0.0000
50852 ENSMUSG00000056429 Tgoln1 trans-golgi network protein -6.9307 0.0000
50851 ENSMUSG00000097929 Tunar Tcl1 upstream neural differentiation associated RNA -6.9292 0.0000
50850 ENSMUSG00000043843 Tmem145 transmembrane protein 145 -6.9274 0.0000
50849 ENSMUSG00000031458 Coprs coordinator of PRMT5, differentiation stimulator -6.9265 0.0000
50848 ENSMUSG00000027947 Il6ra interleukin 6 receptor, alpha -6.9258 0.0000
50847 ENSMUSG00000049321 Zfp2 zinc finger protein 2 -6.9157 0.0000
50846 ENSMUSG00000032532 Cck cholecystokinin -6.9150 0.0000
50845 ENSMUSG00000107877 Gm43951 predicted gene, 43951 -6.9118 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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