Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147580
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147580
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP023116
SRP023116_M1
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000064763
Gm23515
predicted gene, 23515
9.0821
0.0000
2
ENSMUSG00000099069
Mir8090
microRNA 8090
9.0768
0.0000
3
ENSMUSG00000074595
Wfdc6a
WAP four-disulfide core domain 6A
8.6770
0.0000
4
ENSMUSG00000077257
Gm26080
predicted gene, 26080
8.4686
0.0000
5
ENSMUSG00000080542
Rnu4atac
RNA, U4atac small nuclear (U12-dependent splicing)
8.4686
0.0000
6
ENSMUSG00000107722
2900060B14Rik
RIKEN cDNA 2900060B14 gene
8.4686
0.0000
7
ENSMUSG00000066359
Tcl1b1
T cell leukemia/lymphoma 1B, 1
8.2715
0.0000
8
ENSMUSG00000089627
Gm16228
predicted gene 16228
8.2510
0.0000
9
ENSMUSG00000072722
Gm6588
predicted gene 6588
8.1816
0.0000
10
ENSMUSG00000109602
Gm31597
predicted gene, 31597
8.1749
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000014496
Ankrd28
ankyrin repeat domain 28
-4.6537
0.0000
47080
ENSMUSG00000042133
Ppig
peptidyl-prolyl isomerase G (cyclophilin G)
-4.6533
0.0000
47079
ENSMUSG00000102526
Gm37785
predicted gene, 37785
-4.6527
0.0000
47078
ENSMUSG00000079235
Ccdc13
coiled-coil domain containing 13
-4.6519
0.0000
47077
ENSMUSG00000086134
Gm16159
predicted gene 16159
-4.6515
0.0001
47076
ENSMUSG00000054733
Msra
methionine sulfoxide reductase A
-4.6514
0.0000
47075
ENSMUSG00000073514
Dok6
docking protein 6
-4.6513
0.0000
47074
ENSMUSG00000068739
Sars
seryl-aminoacyl-tRNA synthetase
-4.6511
0.0000
47073
ENSMUSG00000033429
Mcee
methylmalonyl CoA epimerase
-4.6508
0.5634
47072
ENSMUSG00000024696
Lpxn
leupaxin
-4.6503
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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