Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147580

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147580 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP023116	SRP023116_M1	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000064763	Gm23515	predicted gene, 23515	9.0821	0.0000
2	ENSMUSG00000099069	Mir8090	microRNA 8090	9.0768	0.0000
3	ENSMUSG00000074595	Wfdc6a	WAP four-disulfide core domain 6A	8.6770	0.0000
4	ENSMUSG00000077257	Gm26080	predicted gene, 26080	8.4686	0.0000
5	ENSMUSG00000080542	Rnu4atac	RNA, U4atac small nuclear (U12-dependent splicing)	8.4686	0.0000
6	ENSMUSG00000107722	2900060B14Rik	RIKEN cDNA 2900060B14 gene	8.4686	0.0000
7	ENSMUSG00000066359	Tcl1b1	T cell leukemia/lymphoma 1B, 1	8.2715	0.0000
8	ENSMUSG00000089627	Gm16228	predicted gene 16228	8.2510	0.0000
9	ENSMUSG00000072722	Gm6588	predicted gene 6588	8.1816	0.0000
10	ENSMUSG00000109602	Gm31597	predicted gene, 31597	8.1749	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000014496	Ankrd28	ankyrin repeat domain 28	-4.6537	0.0000
47080	ENSMUSG00000042133	Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	-4.6533	0.0000
47079	ENSMUSG00000102526	Gm37785	predicted gene, 37785	-4.6527	0.0000
47078	ENSMUSG00000079235	Ccdc13	coiled-coil domain containing 13	-4.6519	0.0000
47077	ENSMUSG00000086134	Gm16159	predicted gene 16159	-4.6515	0.0001
47076	ENSMUSG00000054733	Msra	methionine sulfoxide reductase A	-4.6514	0.0000
47075	ENSMUSG00000073514	Dok6	docking protein 6	-4.6513	0.0000
47074	ENSMUSG00000068739	Sars	seryl-aminoacyl-tRNA synthetase	-4.6511	0.0000
47073	ENSMUSG00000033429	Mcee	methylmalonyl CoA epimerase	-4.6508	0.5634
47072	ENSMUSG00000024696	Lpxn	leupaxin	-4.6503	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...