Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147580


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M1Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000064763 Gm23515 predicted gene, 23515 9.0821 0.0000
2 ENSMUSG00000099069 Mir8090 microRNA 8090 9.0768 0.0000
3 ENSMUSG00000074595 Wfdc6a WAP four-disulfide core domain 6A 8.6770 0.0000
4 ENSMUSG00000077257 Gm26080 predicted gene, 26080 8.4686 0.0000
5 ENSMUSG00000080542 Rnu4atac RNA, U4atac small nuclear (U12-dependent splicing) 8.4686 0.0000
6 ENSMUSG00000107722 2900060B14Rik RIKEN cDNA 2900060B14 gene 8.4686 0.0000
7 ENSMUSG00000066359 Tcl1b1 T cell leukemia/lymphoma 1B, 1 8.2715 0.0000
8 ENSMUSG00000089627 Gm16228 predicted gene 16228 8.2510 0.0000
9 ENSMUSG00000072722 Gm6588 predicted gene 6588 8.1816 0.0000
10 ENSMUSG00000109602 Gm31597 predicted gene, 31597 8.1749 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000014496 Ankrd28 ankyrin repeat domain 28 -4.6537 0.0000
47080 ENSMUSG00000042133 Ppig peptidyl-prolyl isomerase G (cyclophilin G) -4.6533 0.0000
47079 ENSMUSG00000102526 Gm37785 predicted gene, 37785 -4.6527 0.0000
47078 ENSMUSG00000079235 Ccdc13 coiled-coil domain containing 13 -4.6519 0.0000
47077 ENSMUSG00000086134 Gm16159 predicted gene 16159 -4.6515 0.0001
47076 ENSMUSG00000054733 Msra methionine sulfoxide reductase A -4.6514 0.0000
47075 ENSMUSG00000073514 Dok6 docking protein 6 -4.6513 0.0000
47074 ENSMUSG00000068739 Sars seryl-aminoacyl-tRNA synthetase -4.6511 0.0000
47073 ENSMUSG00000033429 Mcee methylmalonyl CoA epimerase -4.6508 0.5634
47072 ENSMUSG00000024696 Lpxn leupaxin -4.6503 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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