SHOGoiN Cell Methylome: GSM1147580
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147580 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP023116 | SRP023116_M1 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000064763 | Gm23515 | predicted gene, 23515 | 9.0821 | 0.0000 |
| 2 | ENSMUSG00000099069 | Mir8090 | microRNA 8090 | 9.0768 | 0.0000 |
| 3 | ENSMUSG00000074595 | Wfdc6a | WAP four-disulfide core domain 6A | 8.6770 | 0.0000 |
| 4 | ENSMUSG00000077257 | Gm26080 | predicted gene, 26080 | 8.4686 | 0.0000 |
| 5 | ENSMUSG00000080542 | Gm22710 | predicted gene, 22710 | 8.4686 | 0.0000 |
| 6 | ENSMUSG00000107722 | 2900060B14Rik | RIKEN cDNA 2900060B14 gene | 8.4686 | 0.0000 |
| 7 | ENSMUSG00000066359 | Tcl1b1 | T cell leukemia/lymphoma 1B, 1 | 8.2715 | 0.0000 |
| 8 | ENSMUSG00000089627 | Gm16228 | predicted gene 16228 | 8.2510 | 0.0000 |
| 9 | ENSMUSG00000072722 | Gm6588 | predicted gene 6588 | 8.1816 | 0.0000 |
| 10 | ENSMUSG00000109602 | Gm31597 | predicted gene, 31597 | 8.1749 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000038975 | Rabggtb | Rab geranylgeranyl transferase, b subunit | -6.9323 | 0.0000 |
| 50853 | ENSMUSG00000005493 | Msh4 | mutS homolog 4 | -6.9323 | 0.0000 |
| 50852 | ENSMUSG00000056429 | Tgoln1 | trans-golgi network protein | -6.9307 | 0.0000 |
| 50851 | ENSMUSG00000097929 | Tunar | Tcl1 upstream neural differentiation associated RNA | -6.9292 | 0.0000 |
| 50850 | ENSMUSG00000043843 | Tmem145 | transmembrane protein 145 | -6.9274 | 0.0000 |
| 50849 | ENSMUSG00000031458 | Coprs | coordinator of PRMT5, differentiation stimulator | -6.9265 | 0.0000 |
| 50848 | ENSMUSG00000027947 | Il6ra | interleukin 6 receptor, alpha | -6.9258 | 0.0000 |
| 50847 | ENSMUSG00000049321 | Zfp2 | zinc finger protein 2 | -6.9157 | 0.0000 |
| 50846 | ENSMUSG00000032532 | Cck | cholecystokinin | -6.9150 | 0.0000 |
| 50845 | ENSMUSG00000107877 | Gm43951 | predicted gene, 43951 | -6.9118 | 0.0000 |
