Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147581

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147581 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP023116	SRP023116_M2	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000066060	Gm12866	predicted gene 12866	7.9278	0.0000
2	ENSMUSG00000086405	9330198N18Rik	RIKEN cDNA 9330198N18 gene	7.6906	0.0000
3	ENSMUSG00000028280	Gabrr1	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	7.4919	0.0000
4	ENSMUSG00000043501	Lgals2	lectin, galactose-binding, soluble 2	7.3092	0.0000
5	ENSMUSG00000104037	Gm37776	predicted gene, 37776	7.2637	0.0000
6	ENSMUSG00000100357	Gm28181	predicted gene 28181	7.1799	0.0000
7	ENSMUSG00000085001	Rapgef4os2	Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2	7.0553	0.0000
8	ENSMUSG00000038044	Cct8l1	chaperonin containing TCP1, subunit 8 (theta)-like 1	6.9542	0.0000
10	ENSMUSG00000072878	1700123L14Rik	RIKEN cDNA 1700123L14 gene	6.9174	0.0000
47072	ENSMUSG00000034968	Lbx2	ladybird homeobox 2	-3.4045	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000024646	Cyb5a	cytochrome b5 type A (microsomal)	-3.4067	0.0000
47080	ENSMUSG00000045817	Zfp36l2	zinc finger protein 36, C3H type-like 2	-3.4067	0.0000
47079	ENSMUSG00000038541	Srd5a2	steroid 5 alpha-reductase 2	-3.4065	0.0000
47078	ENSMUSG00000049288	Lix1l	Lix1-like	-3.4065	0.0000
47077	ENSMUSG00000046718	Bst2	bone marrow stromal cell antigen 2	-3.4063	0.0000
47076	ENSMUSG00000030956	Fam53b	family with sequence similarity 53, member B	-3.4057	0.0000
47075	ENSMUSG00000065470	Mir149	microRNA 149	-3.4056	0.3067
47074	ENSMUSG00000040351	Ankib1	ankyrin repeat and IBR domain containing 1	-3.4052	0.0000
47073	ENSMUSG00000053119	Chmp3	charged multivesicular body protein 3	-3.4048	0.0000
47072	ENSMUSG00000034968	Lbx2	ladybird homeobox 2	-3.4045	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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