Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147581


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M2Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000066060 Gm12866 predicted gene 12866 7.9278 0.0000
2 ENSMUSG00000086405 9330198N18Rik RIKEN cDNA 9330198N18 gene 7.6906 0.0000
3 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 7.4919 0.0000
4 ENSMUSG00000043501 Lgals2 lectin, galactose-binding, soluble 2 7.3092 0.0000
5 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.2637 0.0000
6 ENSMUSG00000100357 Gm28181 predicted gene 28181 7.1799 0.0000
7 ENSMUSG00000085001 Rapgef4os2 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 7.0553 0.0000
8 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 6.9542 0.0000
10 ENSMUSG00000072878 1700123L14Rik RIKEN cDNA 1700123L14 gene 6.9174 0.0000
47072 ENSMUSG00000034968 Lbx2 ladybird homeobox 2 -3.4045 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000024646 Cyb5a cytochrome b5 type A (microsomal) -3.4067 0.0000
47080 ENSMUSG00000045817 Zfp36l2 zinc finger protein 36, C3H type-like 2 -3.4067 0.0000
47079 ENSMUSG00000038541 Srd5a2 steroid 5 alpha-reductase 2 -3.4065 0.0000
47078 ENSMUSG00000049288 Lix1l Lix1-like -3.4065 0.0000
47077 ENSMUSG00000046718 Bst2 bone marrow stromal cell antigen 2 -3.4063 0.0000
47076 ENSMUSG00000030956 Fam53b family with sequence similarity 53, member B -3.4057 0.0000
47075 ENSMUSG00000065470 Mir149 microRNA 149 -3.4056 0.3067
47074 ENSMUSG00000040351 Ankib1 ankyrin repeat and IBR domain containing 1 -3.4052 0.0000
47073 ENSMUSG00000053119 Chmp3 charged multivesicular body protein 3 -3.4048 0.0000
47072 ENSMUSG00000034968 Lbx2 ladybird homeobox 2 -3.4045 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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