Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147581
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147581
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP023116
SRP023116_M2
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000066060
Gm12866
predicted gene 12866
7.9278
0.0000
2
ENSMUSG00000086405
9330198N18Rik
RIKEN cDNA 9330198N18 gene
7.6906
0.0000
3
ENSMUSG00000028280
Gabrr1
gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
7.4919
0.0000
4
ENSMUSG00000043501
Lgals2
lectin, galactose-binding, soluble 2
7.3092
0.0000
5
ENSMUSG00000104037
Gm37776
predicted gene, 37776
7.2637
0.0000
6
ENSMUSG00000100357
Gm28181
predicted gene 28181
7.1799
0.0000
7
ENSMUSG00000085001
Rapgef4os2
Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2
7.0553
0.0000
8
ENSMUSG00000038044
Cct8l1
chaperonin containing TCP1, subunit 8 (theta)-like 1
6.9542
0.0000
10
ENSMUSG00000072878
1700123L14Rik
RIKEN cDNA 1700123L14 gene
6.9174
0.0000
47072
ENSMUSG00000034968
Lbx2
ladybird homeobox 2
-3.4045
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000024646
Cyb5a
cytochrome b5 type A (microsomal)
-3.4067
0.0000
47080
ENSMUSG00000045817
Zfp36l2
zinc finger protein 36, C3H type-like 2
-3.4067
0.0000
47079
ENSMUSG00000038541
Srd5a2
steroid 5 alpha-reductase 2
-3.4065
0.0000
47078
ENSMUSG00000049288
Lix1l
Lix1-like
-3.4065
0.0000
47077
ENSMUSG00000046718
Bst2
bone marrow stromal cell antigen 2
-3.4063
0.0000
47076
ENSMUSG00000030956
Fam53b
family with sequence similarity 53, member B
-3.4057
0.0000
47075
ENSMUSG00000065470
Mir149
microRNA 149
-3.4056
0.3067
47074
ENSMUSG00000040351
Ankib1
ankyrin repeat and IBR domain containing 1
-3.4052
0.0000
47073
ENSMUSG00000053119
Chmp3
charged multivesicular body protein 3
-3.4048
0.0000
47072
ENSMUSG00000034968
Lbx2
ladybird homeobox 2
-3.4045
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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