SHOGoiN Cell Methylome: GSM1147581
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147581 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP023116 | SRP023116_M2 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000066060 | Gm12866 | predicted gene 12866 | 7.9278 | 0.0000 |
| 2 | ENSMUSG00000086405 | 9330198N18Rik | RIKEN cDNA 9330198N18 gene | 7.6906 | 0.0000 |
| 3 | ENSMUSG00000028280 | Gabrr1 | gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 | 7.4919 | 0.0000 |
| 4 | ENSMUSG00000043501 | Lgals2 | lectin, galactose-binding, soluble 2 | 7.3092 | 0.0000 |
| 5 | ENSMUSG00000104037 | Gm37776 | predicted gene, 37776 | 7.2637 | 0.0000 |
| 6 | ENSMUSG00000100357 | Gm28181 | predicted gene 28181 | 7.1799 | 0.0000 |
| 7 | ENSMUSG00000085001 | Rapgef4os2 | Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 | 7.0553 | 0.0000 |
| 8 | ENSMUSG00000038044 | Cct8l1 | chaperonin containing TCP1, subunit 8 (theta)-like 1 | 6.9542 | 0.0000 |
| 9 | ENSMUSG00000088340 | Gm22338 | predicted gene, 22338 | 6.9307 | 0.0000 |
| 10 | ENSMUSG00000072878 | 1700123L14Rik | RIKEN cDNA 1700123L14 gene | 6.9174 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000030247 | Kcnj8 | potassium inwardly-rectifying channel, subfamily J, member 8 | -5.6643 | 0.0000 |
| 50853 | ENSMUSG00000060038 | Dhps | deoxyhypusine synthase | -5.6625 | 0.0000 |
| 50852 | ENSMUSG00000015247 | Nipsnap3b | nipsnap homolog 3B | -5.6609 | 0.0000 |
| 50851 | ENSMUSG00000025423 | Pias2 | protein inhibitor of activated STAT 2 | -5.6556 | 0.0000 |
| 50850 | ENSMUSG00000098944 | Mir8120 | microRNA 8120 | -5.6541 | 0.0000 |
| 50849 | ENSMUSG00000060034 | Ctf2 | cardiotrophin 2 | -5.6512 | 0.0000 |
| 50848 | ENSMUSG00000037253 | Mex3c | mex3 RNA binding family member C | -5.6505 | 0.0000 |
| 50847 | ENSMUSG00000039826 | Trub2 | TruB pseudouridine (psi) synthase family member 2 | -5.6489 | 0.0000 |
| 50846 | ENSMUSG00000098881 | Mir6927 | microRNA 6927 | -5.6439 | 0.0000 |
| 50845 | ENSMUSG00000036086 | Zranb3 | zinc finger, RAN-binding domain containing 3 | -5.6439 | 0.0001 |
