SHOGoiN Cell Methylome: GSM1147581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147581


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M2Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000066060 Gm12866 predicted gene 12866 7.9278 0.0000
2 ENSMUSG00000086405 9330198N18Rik RIKEN cDNA 9330198N18 gene 7.6906 0.0000
3 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 7.4919 0.0000
4 ENSMUSG00000043501 Lgals2 lectin, galactose-binding, soluble 2 7.3092 0.0000
5 ENSMUSG00000104037 Gm37776 predicted gene, 37776 7.2637 0.0000
6 ENSMUSG00000100357 Gm28181 predicted gene 28181 7.1799 0.0000
7 ENSMUSG00000085001 Rapgef4os2 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 7.0553 0.0000
8 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 6.9542 0.0000
9 ENSMUSG00000088340 Gm22338 predicted gene, 22338 6.9307 0.0000
10 ENSMUSG00000072878 1700123L14Rik RIKEN cDNA 1700123L14 gene 6.9174 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000030247 Kcnj8 potassium inwardly-rectifying channel, subfamily J, member 8 -5.6643 0.0000
50853 ENSMUSG00000060038 Dhps deoxyhypusine synthase -5.6625 0.0000
50852 ENSMUSG00000015247 Nipsnap3b nipsnap homolog 3B -5.6609 0.0000
50851 ENSMUSG00000025423 Pias2 protein inhibitor of activated STAT 2 -5.6556 0.0000
50850 ENSMUSG00000098944 Mir8120 microRNA 8120 -5.6541 0.0000
50849 ENSMUSG00000060034 Ctf2 cardiotrophin 2 -5.6512 0.0000
50848 ENSMUSG00000037253 Mex3c mex3 RNA binding family member C -5.6505 0.0000
50847 ENSMUSG00000039826 Trub2 TruB pseudouridine (psi) synthase family member 2 -5.6489 0.0000
50846 ENSMUSG00000098881 Mir6927 microRNA 6927 -5.6439 0.0000
50845 ENSMUSG00000036086 Zranb3 zinc finger, RAN-binding domain containing 3 -5.6439 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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