Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1147582
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147582
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP023116
SRP023116_M3
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000082286
Pisd-ps1
phosphatidylserine decarboxylase, pseudogene 1
8.4757
0.0000
2
ENSMUSG00000102862
Gm37640
predicted gene, 37640
8.3129
0.0000
3
ENSMUSG00000112886
Gm18339
predicted gene, 18339
7.9542
0.0000
6
ENSMUSG00000093665
Obox3-ps1
oocyte specific homeobox 3, pseudogene 1
7.4346
0.0000
7
ENSMUSG00000100789
Gm29508
predicted gene 29508
7.3428
0.0000
8
ENSMUSG00000023013
Aqp2
aquaporin 2
7.1997
0.0000
9
ENSMUSG00000077647
Gm24981
predicted gene, 24981
7.1997
0.0000
10
ENSMUSG00000067610
Klri1
killer cell lectin-like receptor family I member 1
7.1898
0.0000
47072
ENSMUSG00000045589
Frrs1l
ferric-chelate reductase 1 like
-3.9449
0.0000
47073
ENSMUSG00000102969
Gm33366
predicted gene, 33366
-3.9458
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000033904
Ccp110
centriolar coiled coil protein 110
-3.9472
0.0000
47080
ENSMUSG00000110707
Gm45795
predicted gene 45795
-3.9472
0.0000
47079
ENSMUSG00000041556
Fbxo2
F-box protein 2
-3.9463
0.0000
47078
ENSMUSG00000109899
Gm6012
predicted gene 6012
-3.9462
0.0000
47077
ENSMUSG00000054717
Hmgb2
high mobility group box 2
-3.9462
0.0000
47076
ENSMUSG00000110706
Gm45709
predicted gene 45709
-3.9461
0.0000
47075
ENSMUSG00000031986
Sprtn
SprT-like N-terminal domain
-3.9461
0.0000
47074
ENSMUSG00000035329
Fbxo33
F-box protein 33
-3.9460
0.0000
47073
ENSMUSG00000102969
Gm33366
predicted gene, 33366
-3.9458
0.0000
47072
ENSMUSG00000045589
Frrs1l
ferric-chelate reductase 1 like
-3.9449
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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