Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147582


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M3Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000082286 Pisd-ps1 phosphatidylserine decarboxylase, pseudogene 1 8.4757 0.0000
2 ENSMUSG00000102862 Gm37640 predicted gene, 37640 8.3129 0.0000
3 ENSMUSG00000112886 Gm18339 predicted gene, 18339 7.9542 0.0000
6 ENSMUSG00000093665 Obox3-ps1 oocyte specific homeobox 3, pseudogene 1 7.4346 0.0000
7 ENSMUSG00000100789 Gm29508 predicted gene 29508 7.3428 0.0000
8 ENSMUSG00000023013 Aqp2 aquaporin 2 7.1997 0.0000
9 ENSMUSG00000077647 Gm24981 predicted gene, 24981 7.1997 0.0000
10 ENSMUSG00000067610 Klri1 killer cell lectin-like receptor family I member 1 7.1898 0.0000
47072 ENSMUSG00000045589 Frrs1l ferric-chelate reductase 1 like -3.9449 0.0000
47073 ENSMUSG00000102969 Gm33366 predicted gene, 33366 -3.9458 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000033904 Ccp110 centriolar coiled coil protein 110 -3.9472 0.0000
47080 ENSMUSG00000110707 Gm45795 predicted gene 45795 -3.9472 0.0000
47079 ENSMUSG00000041556 Fbxo2 F-box protein 2 -3.9463 0.0000
47078 ENSMUSG00000109899 Gm6012 predicted gene 6012 -3.9462 0.0000
47077 ENSMUSG00000054717 Hmgb2 high mobility group box 2 -3.9462 0.0000
47076 ENSMUSG00000110706 Gm45709 predicted gene 45709 -3.9461 0.0000
47075 ENSMUSG00000031986 Sprtn SprT-like N-terminal domain -3.9461 0.0000
47074 ENSMUSG00000035329 Fbxo33 F-box protein 33 -3.9460 0.0000
47073 ENSMUSG00000102969 Gm33366 predicted gene, 33366 -3.9458 0.0000
47072 ENSMUSG00000045589 Frrs1l ferric-chelate reductase 1 like -3.9449 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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