SHOGoiN Cell Methylome: GSM1147583
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147583 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP023116 | SRP023116_M4 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000047502 | Mroh7 | maestro heat-like repeat family member 7 | 8.8281 | 0.0000 |
| 2 | ENSMUSG00000098281 | Gm27529 | predicted gene, 27529 | 8.7966 | 0.0000 |
| 3 | ENSMUSG00000086039 | Gm12227 | predicted gene 12227 | 8.4321 | 0.0000 |
| 4 | ENSMUSG00000047861 | Foxi1 | forkhead box I1 | 8.4277 | 0.0000 |
| 5 | ENSMUSG00000098842 | Gm27907 | predicted gene, 27907 | 8.0590 | 0.0000 |
| 6 | ENSMUSG00000087950 | Mir1948 | microRNA 1948 | 7.9858 | 0.0000 |
| 7 | ENSMUSG00000091003 | Gm7244 | predicted gene 7244 | 7.9581 | 0.0000 |
| 8 | ENSMUSG00000077507 | Gm24235 | predicted gene, 24235 | 7.8826 | 0.0000 |
| 9 | ENSMUSG00000081152 | Gm12430 | predicted gene 12430 | 7.8765 | 0.0000 |
| 10 | ENSMUSG00000028280 | Gabrr1 | gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 | 7.7748 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000042846 | Lrrtm3 | leucine rich repeat transmembrane neuronal 3 | -6.7944 | 0.0000 |
| 50853 | ENSMUSG00000007338 | Mrpl49 | mitochondrial ribosomal protein L49 | -6.7916 | 0.0000 |
| 50852 | ENSMUSG00000051890 | Klhdc1 | kelch domain containing 1 | -6.7880 | 0.0000 |
| 50851 | ENSMUSG00000072952 | Gm5878 | predicted gene 5878 | -6.7838 | 0.0000 |
| 50850 | ENSMUSG00000054418 | 2900041M22Rik | RIKEN cDNA 2900041M22 gene | -6.7814 | 0.0009 |
| 50849 | ENSMUSG00000054226 | Tprkb | Tp53rk binding protein | -6.7811 | 0.0000 |
| 50848 | ENSMUSG00000108719 | Gm44757 | predicted gene 44757 | -6.7790 | 0.0000 |
| 50847 | ENSMUSG00000075227 | Znhit2 | zinc finger, HIT domain containing 2 | -6.7790 | 0.0000 |
| 50846 | ENSMUSG00000085665 | Gm12059 | predicted gene 12059 | -6.7763 | 0.0000 |
| 50845 | ENSMUSG00000074170 | Plekhf1 | pleckstrin homology domain containing, family F (with FYVE domain) member 1 | -6.7743 | 0.0000 |
