Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147583


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M4Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000047502 Mroh7 maestro heat-like repeat family member 7 8.8281 0.0000
3 ENSMUSG00000086039 Gm12227 predicted gene 12227 8.4321 0.0000
4 ENSMUSG00000047861 Foxi1 forkhead box I1 8.4277 0.0000
6 ENSMUSG00000087950 Mir1948 microRNA 1948 7.9858 0.0000
7 ENSMUSG00000091003 Gm7244 predicted gene 7244 7.9581 0.0000
8 ENSMUSG00000077507 Gm24235 predicted gene, 24235 7.8826 0.0000
9 ENSMUSG00000081152 Gm12430 predicted gene 12430 7.8765 0.0000
10 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 7.7748 0.0000
47072 ENSMUSG00000040722 Scamp5 secretory carrier membrane protein 5 -4.7667 0.0000
47073 ENSMUSG00000038467 Chmp4b charged multivesicular body protein 4B -4.7670 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000030189 Ybx3 Y box protein 3 -4.7706 0.0000
47080 ENSMUSG00000074852 Hpse2 heparanase 2 -4.7705 0.0000
47079 ENSMUSG00000052133 Sema5b sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B -4.7696 0.0000
47078 ENSMUSG00000031545 Gpat4 glycerol-3-phosphate acyltransferase 4 -4.7688 0.0000
47077 ENSMUSG00000036941 Elac1 elaC ribonuclease Z 1 -4.7683 0.0000
47076 ENSMUSG00000027210 Meis2 Meis homeobox 2 -4.7674 0.0000
47075 ENSMUSG00000022849 Hspbap1 Hspb associated protein 1 -4.7673 0.0000
47074 ENSMUSG00000015522 Arnt aryl hydrocarbon receptor nuclear translocator -4.7671 0.0000
47073 ENSMUSG00000038467 Chmp4b charged multivesicular body protein 4B -4.7670 0.0000
47072 ENSMUSG00000040722 Scamp5 secretory carrier membrane protein 5 -4.7667 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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