Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147583

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147583 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP023116	SRP023116_M4	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000047502	Mroh7	maestro heat-like repeat family member 7	8.8281	0.0000
3	ENSMUSG00000086039	Gm12227	predicted gene 12227	8.4321	0.0000
4	ENSMUSG00000047861	Foxi1	forkhead box I1	8.4277	0.0000
6	ENSMUSG00000087950	Mir1948	microRNA 1948	7.9858	0.0000
7	ENSMUSG00000091003	Gm7244	predicted gene 7244	7.9581	0.0000
8	ENSMUSG00000077507	Gm24235	predicted gene, 24235	7.8826	0.0000
9	ENSMUSG00000081152	Gm12430	predicted gene 12430	7.8765	0.0000
10	ENSMUSG00000028280	Gabrr1	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	7.7748	0.0000
47072	ENSMUSG00000040722	Scamp5	secretory carrier membrane protein 5	-4.7667	0.0000
47073	ENSMUSG00000038467	Chmp4b	charged multivesicular body protein 4B	-4.7670	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000030189	Ybx3	Y box protein 3	-4.7706	0.0000
47080	ENSMUSG00000074852	Hpse2	heparanase 2	-4.7705	0.0000
47079	ENSMUSG00000052133	Sema5b	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	-4.7696	0.0000
47078	ENSMUSG00000031545	Gpat4	glycerol-3-phosphate acyltransferase 4	-4.7688	0.0000
47077	ENSMUSG00000036941	Elac1	elaC ribonuclease Z 1	-4.7683	0.0000
47076	ENSMUSG00000027210	Meis2	Meis homeobox 2	-4.7674	0.0000
47075	ENSMUSG00000022849	Hspbap1	Hspb associated protein 1	-4.7673	0.0000
47074	ENSMUSG00000015522	Arnt	aryl hydrocarbon receptor nuclear translocator	-4.7671	0.0000
47073	ENSMUSG00000038467	Chmp4b	charged multivesicular body protein 4B	-4.7670	0.0000
47072	ENSMUSG00000040722	Scamp5	secretory carrier membrane protein 5	-4.7667	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...