SHOGoiN Cell Methylome: GSM1147583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147583


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M4Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000047502 Mroh7 maestro heat-like repeat family member 7 8.8281 0.0000
2 ENSMUSG00000098281 Gm27529 predicted gene, 27529 8.7966 0.0000
3 ENSMUSG00000086039 Gm12227 predicted gene 12227 8.4321 0.0000
4 ENSMUSG00000047861 Foxi1 forkhead box I1 8.4277 0.0000
5 ENSMUSG00000098842 Gm27907 predicted gene, 27907 8.0590 0.0000
6 ENSMUSG00000087950 Mir1948 microRNA 1948 7.9858 0.0000
7 ENSMUSG00000091003 Gm7244 predicted gene 7244 7.9581 0.0000
8 ENSMUSG00000077507 Gm24235 predicted gene, 24235 7.8826 0.0000
9 ENSMUSG00000081152 Gm12430 predicted gene 12430 7.8765 0.0000
10 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 7.7748 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000042846 Lrrtm3 leucine rich repeat transmembrane neuronal 3 -6.7944 0.0000
50853 ENSMUSG00000007338 Mrpl49 mitochondrial ribosomal protein L49 -6.7916 0.0000
50852 ENSMUSG00000051890 Klhdc1 kelch domain containing 1 -6.7880 0.0000
50851 ENSMUSG00000072952 Gm5878 predicted gene 5878 -6.7838 0.0000
50850 ENSMUSG00000054418 2900041M22Rik RIKEN cDNA 2900041M22 gene -6.7814 0.0009
50849 ENSMUSG00000054226 Tprkb Tp53rk binding protein -6.7811 0.0000
50848 ENSMUSG00000108719 Gm44757 predicted gene 44757 -6.7790 0.0000
50847 ENSMUSG00000075227 Znhit2 zinc finger, HIT domain containing 2 -6.7790 0.0000
50846 ENSMUSG00000085665 Gm12059 predicted gene 12059 -6.7763 0.0000
50845 ENSMUSG00000074170 Plekhf1 pleckstrin homology domain containing, family F (with FYVE domain) member 1 -6.7743 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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