Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147583
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147583
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP023116
SRP023116_M4
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000047502
Mroh7
maestro heat-like repeat family member 7
8.8281
0.0000
3
ENSMUSG00000086039
Gm12227
predicted gene 12227
8.4321
0.0000
4
ENSMUSG00000047861
Foxi1
forkhead box I1
8.4277
0.0000
6
ENSMUSG00000087950
Mir1948
microRNA 1948
7.9858
0.0000
7
ENSMUSG00000091003
Gm7244
predicted gene 7244
7.9581
0.0000
8
ENSMUSG00000077507
Gm24235
predicted gene, 24235
7.8826
0.0000
9
ENSMUSG00000081152
Gm12430
predicted gene 12430
7.8765
0.0000
10
ENSMUSG00000028280
Gabrr1
gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
7.7748
0.0000
47072
ENSMUSG00000040722
Scamp5
secretory carrier membrane protein 5
-4.7667
0.0000
47073
ENSMUSG00000038467
Chmp4b
charged multivesicular body protein 4B
-4.7670
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000030189
Ybx3
Y box protein 3
-4.7706
0.0000
47080
ENSMUSG00000074852
Hpse2
heparanase 2
-4.7705
0.0000
47079
ENSMUSG00000052133
Sema5b
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
-4.7696
0.0000
47078
ENSMUSG00000031545
Gpat4
glycerol-3-phosphate acyltransferase 4
-4.7688
0.0000
47077
ENSMUSG00000036941
Elac1
elaC ribonuclease Z 1
-4.7683
0.0000
47076
ENSMUSG00000027210
Meis2
Meis homeobox 2
-4.7674
0.0000
47075
ENSMUSG00000022849
Hspbap1
Hspb associated protein 1
-4.7673
0.0000
47074
ENSMUSG00000015522
Arnt
aryl hydrocarbon receptor nuclear translocator
-4.7671
0.0000
47073
ENSMUSG00000038467
Chmp4b
charged multivesicular body protein 4B
-4.7670
0.0000
47072
ENSMUSG00000040722
Scamp5
secretory carrier membrane protein 5
-4.7667
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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