Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147584


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M5Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000087835 Gm24481 predicted gene, 24481 6.0224 0.0000
2 ENSMUSG00000006711 D130043K22Rik RIKEN cDNA D130043K22 gene 5.9542 0.0000
3 ENSMUSG00000054036 Olfr279 olfactory receptor 279 5.9307 0.0000
4 ENSMUSG00000029154 Cwh43 cell wall biogenesis 43 C-terminal homolog 5.5236 0.0000
5 ENSMUSG00000103441 7530428D23Rik RIKEN cDNA 7530428D23 gene 5.5236 0.0000
6 ENSMUSG00000089659 Gm3470 predicted gene 3470 5.4263 0.0000
7 ENSMUSG00000092409 Gm9613 predicted gene 9613 5.3576 0.0000
8 ENSMUSG00000088832 Gm23543 predicted gene, 23543 5.3557 0.0000
9 ENSMUSG00000026829 Gbgt1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 5.3277 0.0000
10 ENSMUSG00000111342 4933404K13Rik RIKEN cDNA 4933404K13 gene 5.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000107946 Gm44066 predicted gene, 44066 -4.1239 0.0000
50599 ENSMUSG00000034501 Pcnx4 pecanex homolog 4 -4.1239 0.0000
50598 ENSMUSG00000044566 Cage1 cancer antigen 1 -4.1236 0.0000
50597 ENSMUSG00000027286 Lrrc57 leucine rich repeat containing 57 -4.1235 0.0003
50596 ENSMUSG00000027285 Haus2 HAUS augmin-like complex, subunit 2 -4.1235 0.0003
50595 ENSMUSG00000019880 Rspo3 R-spondin 3 -4.1209 0.0000
50594 ENSMUSG00000027879 Sec22b SEC22 homolog B, vesicle trafficking protein -4.1196 0.0000
50593 ENSMUSG00000047959 Kcna3 potassium voltage-gated channel, shaker-related subfamily, member 3 -4.1192 0.0000
50592 ENSMUSG00000041028 Ghitm growth hormone inducible transmembrane protein -4.1191 0.0000
50591 ENSMUSG00000040220 Gas8 growth arrest specific 8 -4.1171 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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