SHOGoiN Cell Methylome: GSM1147584
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147584 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP023116 | SRP023116_M5 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000087835 | Gm24481 | predicted gene, 24481 | 6.0224 | 0.0000 |
| 2 | ENSMUSG00000006711 | D130043K22Rik | RIKEN cDNA D130043K22 gene | 5.9542 | 0.0000 |
| 3 | ENSMUSG00000054036 | Olfr279 | olfactory receptor 279 | 5.9307 | 0.0000 |
| 4 | ENSMUSG00000029154 | Cwh43 | cell wall biogenesis 43 C-terminal homolog | 5.5236 | 0.0000 |
| 5 | ENSMUSG00000103441 | 7530428D23Rik | RIKEN cDNA 7530428D23 gene | 5.5236 | 0.0000 |
| 6 | ENSMUSG00000089659 | Gm3470 | predicted gene 3470 | 5.4263 | 0.0000 |
| 7 | ENSMUSG00000092409 | Gm9613 | predicted gene 9613 | 5.3576 | 0.0000 |
| 8 | ENSMUSG00000088832 | Gm23543 | predicted gene, 23543 | 5.3557 | 0.0000 |
| 9 | ENSMUSG00000026829 | Gbgt1 | globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 | 5.3277 | 0.0000 |
| 10 | ENSMUSG00000111342 | 4933404K13Rik | RIKEN cDNA 4933404K13 gene | 5.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000051391 | Ywhag | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide | -4.4594 | 0.0006 |
| 50853 | ENSMUSG00000049488 | Tmem67 | transmembrane protein 67 | -4.4594 | 0.0000 |
| 50852 | ENSMUSG00000043091 | Tuba1c | tubulin, alpha 1C | -4.4594 | 0.0726 |
| 50851 | ENSMUSG00000025602 | Zfp202 | zinc finger protein 202 | -4.4594 | 0.0726 |
| 50850 | ENSMUSG00000022636 | Alcam | activated leukocyte cell adhesion molecule | -4.4593 | 0.0000 |
| 50849 | ENSMUSG00000036955 | Kif1bp | KIF1 binding protein | -4.4583 | 0.0000 |
| 50848 | ENSMUSG00000044499 | Hs3st5 | heparan sulfate (glucosamine) 3-O-sulfotransferase 5 | -4.4576 | 0.0000 |
| 50847 | ENSMUSG00000020859 | Spag9 | sperm associated antigen 9 | -4.4565 | 0.0000 |
| 50846 | ENSMUSG00000022414 | Tab1 | TGF-beta activated kinase 1/MAP3K7 binding protein 1 | -4.4538 | 0.0000 |
| 50845 | ENSMUSG00000022634 | Yaf2 | YY1 associated factor 2 | -4.4519 | 0.0000 |
