Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM1147584
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147584
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP023116
SRP023116_M5
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000087835
Gm24481
predicted gene, 24481
6.0224
0.0000
2
ENSMUSG00000006711
D130043K22Rik
RIKEN cDNA D130043K22 gene
5.9542
0.0000
3
ENSMUSG00000054036
Olfr279
olfactory receptor 279
5.9307
0.0000
4
ENSMUSG00000029154
Cwh43
cell wall biogenesis 43 C-terminal homolog
5.5236
0.0000
5
ENSMUSG00000103441
7530428D23Rik
RIKEN cDNA 7530428D23 gene
5.5236
0.0000
6
ENSMUSG00000089659
Gm3470
predicted gene 3470
5.4263
0.0000
7
ENSMUSG00000092409
Gm9613
predicted gene 9613
5.3576
0.0000
8
ENSMUSG00000088832
Gm23543
predicted gene, 23543
5.3557
0.0000
9
ENSMUSG00000026829
Gbgt1
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
5.3277
0.0000
10
ENSMUSG00000111342
4933404K13Rik
RIKEN cDNA 4933404K13 gene
5.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
50600
ENSMUSG00000107946
Gm44066
predicted gene, 44066
-4.1239
0.0000
50599
ENSMUSG00000034501
Pcnx4
pecanex homolog 4
-4.1239
0.0000
50598
ENSMUSG00000044566
Cage1
cancer antigen 1
-4.1236
0.0000
50597
ENSMUSG00000027286
Lrrc57
leucine rich repeat containing 57
-4.1235
0.0003
50596
ENSMUSG00000027285
Haus2
HAUS augmin-like complex, subunit 2
-4.1235
0.0003
50595
ENSMUSG00000019880
Rspo3
R-spondin 3
-4.1209
0.0000
50594
ENSMUSG00000027879
Sec22b
SEC22 homolog B, vesicle trafficking protein
-4.1196
0.0000
50593
ENSMUSG00000047959
Kcna3
potassium voltage-gated channel, shaker-related subfamily, member 3
-4.1192
0.0000
50592
ENSMUSG00000041028
Ghitm
growth hormone inducible transmembrane protein
-4.1191
0.0000
50591
ENSMUSG00000040220
Gas8
growth arrest specific 8
-4.1171
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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