Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147584

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147584 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP023116	SRP023116_M5	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000087835	Gm24481	predicted gene, 24481	6.0224	0.0000
2	ENSMUSG00000006711	D130043K22Rik	RIKEN cDNA D130043K22 gene	5.9542	0.0000
3	ENSMUSG00000054036	Olfr279	olfactory receptor 279	5.9307	0.0000
4	ENSMUSG00000029154	Cwh43	cell wall biogenesis 43 C-terminal homolog	5.5236	0.0000
5	ENSMUSG00000103441	7530428D23Rik	RIKEN cDNA 7530428D23 gene	5.5236	0.0000
6	ENSMUSG00000089659	Gm3470	predicted gene 3470	5.4263	0.0000
7	ENSMUSG00000092409	Gm9613	predicted gene 9613	5.3576	0.0000
8	ENSMUSG00000088832	Gm23543	predicted gene, 23543	5.3557	0.0000
9	ENSMUSG00000026829	Gbgt1	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	5.3277	0.0000
10	ENSMUSG00000111342	4933404K13Rik	RIKEN cDNA 4933404K13 gene	5.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
50600	ENSMUSG00000107946	Gm44066	predicted gene, 44066	-4.1239	0.0000
50599	ENSMUSG00000034501	Pcnx4	pecanex homolog 4	-4.1239	0.0000
50598	ENSMUSG00000044566	Cage1	cancer antigen 1	-4.1236	0.0000
50597	ENSMUSG00000027286	Lrrc57	leucine rich repeat containing 57	-4.1235	0.0003
50596	ENSMUSG00000027285	Haus2	HAUS augmin-like complex, subunit 2	-4.1235	0.0003
50595	ENSMUSG00000019880	Rspo3	R-spondin 3	-4.1209	0.0000
50594	ENSMUSG00000027879	Sec22b	SEC22 homolog B, vesicle trafficking protein	-4.1196	0.0000
50593	ENSMUSG00000047959	Kcna3	potassium voltage-gated channel, shaker-related subfamily, member 3	-4.1192	0.0000
50592	ENSMUSG00000041028	Ghitm	growth hormone inducible transmembrane protein	-4.1191	0.0000
50591	ENSMUSG00000040220	Gas8	growth arrest specific 8	-4.1171	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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