Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147585


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M6Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000067931 Zfp948 zinc finger protein 948 8.4553 0.0000
2 ENSMUSG00000088398 Gm26306 predicted gene, 26306 8.4034 0.0000
3 ENSMUSG00000100987 Gm1627 predicted gene 1627 8.3354 0.0000
4 ENSMUSG00000013668 4933402N03Rik RIKEN cDNA 4933402N03 gene 8.3083 0.0000
5 ENSMUSG00000100759 1700029B22Rik RIKEN cDNA 1700029B22 gene 8.3083 0.0000
6 ENSMUSG00000102768 Gm19002 predicted gene, 19002 8.1174 0.0000
7 ENSMUSG00000089598 Gm26158 predicted gene, 26158 8.0954 0.0000
8 ENSMUSG00000095530 Snora19 small nucleolar RNA, H/ACA box 19 8.0954 0.0000
9 ENSMUSG00000105118 Mir3084-2 microRNA 3084-2 8.0954 0.0000
10 ENSMUSG00000103606 Gm412 predicted gene 412 8.0703 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50600 ENSMUSG00000090150 Acad11 acyl-Coenzyme A dehydrogenase family, member 11 -6.2669 0.0000
50599 ENSMUSG00000103564 Gm35067 predicted gene, 35067 -6.2668 0.0027
50598 ENSMUSG00000028228 Cpne3 copine III -6.2655 0.0000
50597 ENSMUSG00000091625 Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated -6.2650 0.0000
50596 ENSMUSG00000031166 Wdr13 WD repeat domain 13 -6.2592 0.0000
50595 ENSMUSG00000024592 C330018D20Rik RIKEN cDNA C330018D20 gene -6.2499 0.0000
50594 ENSMUSG00000105600 Gm5987 predicted gene 5987 -6.2479 0.0000
50593 ENSMUSG00000021474 Sfxn1 sideroflexin 1 -6.2479 0.0000
50592 ENSMUSG00000033323 Ctdp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 -6.2473 0.0000
50591 ENSMUSG00000047747 Rnf150 ring finger protein 150 -6.2374 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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