Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147586

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147586 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP023116	SRP023116_M7	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000091411	Gm5916	predicted gene 5916	8.9300	0.0000
2	ENSMUSG00000086730	Platr12	pluripotency associated transcript 12	8.5597	0.0000
3	ENSMUSG00000023387	Kcnk16	potassium channel, subfamily K, member 16	8.2394	0.0000
4	ENSMUSG00000005628	Tmod4	tropomodulin 4	8.0955	0.0000
5	ENSMUSG00000092607	Scnm1	sodium channel modifier 1	8.0955	0.0000
6	ENSMUSG00000082806	Rpl13-ps1	ribosomal protein L13, pseudogene 1	8.0572	0.0000
7	ENSMUSG00000104610	Gm567	predicted gene 567	8.0509	0.0000
8	ENSMUSG00000029165	Agbl5	ATP/GTP binding protein-like 5	7.9566	0.0000
9	ENSMUSG00000107201	5930420M18Rik	RIKEN cDNA 5930420M18 gene	7.9566	0.0000
10	ENSMUSG00000079484	Phyhd1	phytanoyl-CoA dioxygenase domain containing 1	7.9464	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000042213	Zfand4	zinc finger, AN1-type domain 4	-3.7796	0.0001
47080	ENSMUSG00000080782	Gm13495	predicted gene 13495	-3.7795	0.0000
47079	ENSMUSG00000036249	Rbm43	RNA binding motif protein 43	-3.7795	0.0000
47078	ENSMUSG00000031697	Orc6	origin recognition complex, subunit 6	-3.7791	0.0000
47077	ENSMUSG00000031696	Vps35	VPS35 retromer complex component	-3.7791	0.0000
47076	ENSMUSG00000097215	Gm26550	predicted gene, 26550	-3.7783	0.0000
47075	ENSMUSG00000097006	9530082P21Rik	RIKEN cDNA 9530082P21 gene	-3.7768	0.0680
47074	ENSMUSG00000098824	Mir7006	microRNA 7006	-3.7768	0.0003
47073	ENSMUSG00000089917	Uckl1	uridine-cytidine kinase 1-like 1	-3.7768	0.0003
47072	ENSMUSG00000010492	Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	-3.7768	0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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