Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1147586
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147586
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP023116
SRP023116_M7
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000091411
Gm5916
predicted gene 5916
8.9300
0.0000
2
ENSMUSG00000086730
Platr12
pluripotency associated transcript 12
8.5597
0.0000
3
ENSMUSG00000023387
Kcnk16
potassium channel, subfamily K, member 16
8.2394
0.0000
4
ENSMUSG00000005628
Tmod4
tropomodulin 4
8.0955
0.0000
5
ENSMUSG00000092607
Scnm1
sodium channel modifier 1
8.0955
0.0000
6
ENSMUSG00000082806
Rpl13-ps1
ribosomal protein L13, pseudogene 1
8.0572
0.0000
7
ENSMUSG00000104610
Gm567
predicted gene 567
8.0509
0.0000
8
ENSMUSG00000029165
Agbl5
ATP/GTP binding protein-like 5
7.9566
0.0000
9
ENSMUSG00000107201
5930420M18Rik
RIKEN cDNA 5930420M18 gene
7.9566
0.0000
10
ENSMUSG00000079484
Phyhd1
phytanoyl-CoA dioxygenase domain containing 1
7.9464
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000042213
Zfand4
zinc finger, AN1-type domain 4
-3.7796
0.0001
47080
ENSMUSG00000080782
Gm13495
predicted gene 13495
-3.7795
0.0000
47079
ENSMUSG00000036249
Rbm43
RNA binding motif protein 43
-3.7795
0.0000
47078
ENSMUSG00000031697
Orc6
origin recognition complex, subunit 6
-3.7791
0.0000
47077
ENSMUSG00000031696
Vps35
VPS35 retromer complex component
-3.7791
0.0000
47076
ENSMUSG00000097215
Gm26550
predicted gene, 26550
-3.7783
0.0000
47075
ENSMUSG00000097006
9530082P21Rik
RIKEN cDNA 9530082P21 gene
-3.7768
0.0680
47074
ENSMUSG00000098824
Mir7006
microRNA 7006
-3.7768
0.0003
47073
ENSMUSG00000089917
Uckl1
uridine-cytidine kinase 1-like 1
-3.7768
0.0003
47072
ENSMUSG00000010492
Uckl1os
uridine-cytidine kinase 1-like 1, opposite strand
-3.7768
0.0003
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...