SHOGoiN Cell Methylome: GSM1147586
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147586 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP023116 | SRP023116_M7 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Embryonic stem cell | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000091411 | Gm5916 | predicted gene 5916 | 8.9300 | 0.0000 |
| 2 | ENSMUSG00000086730 | Platr12 | pluripotency associated transcript 12 | 8.5597 | 0.0000 |
| 3 | ENSMUSG00000023387 | Kcnk16 | potassium channel, subfamily K, member 16 | 8.2394 | 0.0000 |
| 4 | ENSMUSG00000005628 | Tmod4 | tropomodulin 4 | 8.0955 | 0.0000 |
| 5 | ENSMUSG00000092607 | Scnm1 | sodium channel modifier 1 | 8.0955 | 0.0000 |
| 6 | ENSMUSG00000082806 | Rpl13-ps1 | ribosomal protein L13, pseudogene 1 | 8.0572 | 0.0000 |
| 7 | ENSMUSG00000104610 | Gm567 | predicted gene 567 | 8.0509 | 0.0000 |
| 8 | ENSMUSG00000029165 | Agbl5 | ATP/GTP binding protein-like 5 | 7.9566 | 0.0000 |
| 9 | ENSMUSG00000107201 | 5930420M18Rik | RIKEN cDNA 5930420M18 gene | 7.9566 | 0.0000 |
| 10 | ENSMUSG00000079484 | Phyhd1 | phytanoyl-CoA dioxygenase domain containing 1 | 7.9464 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000002289 | Angptl4 | angiopoietin-like 4 | -6.9658 | 0.0000 |
| 50853 | ENSMUSG00000084347 | Akt2-ps | thymoma viral proto-oncogene 2, pseudogene | -6.9640 | 0.0000 |
| 50852 | ENSMUSG00000078974 | Sec61g | SEC61, gamma subunit | -6.9640 | 0.0000 |
| 50851 | ENSMUSG00000053111 | Fank1 | fibronectin type 3 and ankyrin repeat domains 1 | -6.9618 | 0.0000 |
| 50850 | ENSMUSG00000030986 | Dhx32 | DEAH (Asp-Glu-Ala-His) box polypeptide 32 | -6.9618 | 0.0000 |
| 50849 | ENSMUSG00000022075 | Rhobtb2 | Rho-related BTB domain containing 2 | -6.9596 | 0.0000 |
| 50848 | ENSMUSG00000019590 | Cyb561 | cytochrome b-561 | -6.9537 | 0.0000 |
| 50847 | ENSMUSG00000031065 | Cdk16 | cyclin-dependent kinase 16 | -6.9473 | 0.0000 |
| 50846 | ENSMUSG00000102112 | 1810041H14Rik | RIKEN cDNA 1810041H14 gene | -6.9413 | 0.0000 |
| 50845 | ENSMUSG00000041765 | Ubac2 | ubiquitin associated domain containing 2 | -6.9413 | 0.0000 |
