Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147586


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M7Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000091411 Gm5916 predicted gene 5916 8.9300 0.0000
2 ENSMUSG00000086730 Platr12 pluripotency associated transcript 12 8.5597 0.0000
3 ENSMUSG00000023387 Kcnk16 potassium channel, subfamily K, member 16 8.2394 0.0000
4 ENSMUSG00000005628 Tmod4 tropomodulin 4 8.0955 0.0000
5 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 8.0955 0.0000
6 ENSMUSG00000082806 Rpl13-ps1 ribosomal protein L13, pseudogene 1 8.0572 0.0000
7 ENSMUSG00000104610 Gm567 predicted gene 567 8.0509 0.0000
8 ENSMUSG00000029165 Agbl5 ATP/GTP binding protein-like 5 7.9566 0.0000
9 ENSMUSG00000107201 5930420M18Rik RIKEN cDNA 5930420M18 gene 7.9566 0.0000
10 ENSMUSG00000079484 Phyhd1 phytanoyl-CoA dioxygenase domain containing 1 7.9464 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000042213 Zfand4 zinc finger, AN1-type domain 4 -3.7796 0.0001
47080 ENSMUSG00000080782 Gm13495 predicted gene 13495 -3.7795 0.0000
47079 ENSMUSG00000036249 Rbm43 RNA binding motif protein 43 -3.7795 0.0000
47078 ENSMUSG00000031697 Orc6 origin recognition complex, subunit 6 -3.7791 0.0000
47077 ENSMUSG00000031696 Vps35 VPS35 retromer complex component -3.7791 0.0000
47076 ENSMUSG00000097215 Gm26550 predicted gene, 26550 -3.7783 0.0000
47075 ENSMUSG00000097006 9530082P21Rik RIKEN cDNA 9530082P21 gene -3.7768 0.0680
47074 ENSMUSG00000098824 Mir7006 microRNA 7006 -3.7768 0.0003
47073 ENSMUSG00000089917 Uckl1 uridine-cytidine kinase 1-like 1 -3.7768 0.0003
47072 ENSMUSG00000010492 Uckl1os uridine-cytidine kinase 1-like 1, opposite strand -3.7768 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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