SHOGoiN Cell Methylome: GSM1147586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147586


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7020001000000000000000-715Sequence Read ArchiveSRP023116SRP023116_M7Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeEmbryonic stem cellMouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000091411 Gm5916 predicted gene 5916 8.9300 0.0000
2 ENSMUSG00000086730 Platr12 pluripotency associated transcript 12 8.5597 0.0000
3 ENSMUSG00000023387 Kcnk16 potassium channel, subfamily K, member 16 8.2394 0.0000
4 ENSMUSG00000005628 Tmod4 tropomodulin 4 8.0955 0.0000
5 ENSMUSG00000092607 Scnm1 sodium channel modifier 1 8.0955 0.0000
6 ENSMUSG00000082806 Rpl13-ps1 ribosomal protein L13, pseudogene 1 8.0572 0.0000
7 ENSMUSG00000104610 Gm567 predicted gene 567 8.0509 0.0000
8 ENSMUSG00000029165 Agbl5 ATP/GTP binding protein-like 5 7.9566 0.0000
9 ENSMUSG00000107201 5930420M18Rik RIKEN cDNA 5930420M18 gene 7.9566 0.0000
10 ENSMUSG00000079484 Phyhd1 phytanoyl-CoA dioxygenase domain containing 1 7.9464 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000002289 Angptl4 angiopoietin-like 4 -6.9658 0.0000
50853 ENSMUSG00000084347 Akt2-ps thymoma viral proto-oncogene 2, pseudogene -6.9640 0.0000
50852 ENSMUSG00000078974 Sec61g SEC61, gamma subunit -6.9640 0.0000
50851 ENSMUSG00000053111 Fank1 fibronectin type 3 and ankyrin repeat domains 1 -6.9618 0.0000
50850 ENSMUSG00000030986 Dhx32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 -6.9618 0.0000
50849 ENSMUSG00000022075 Rhobtb2 Rho-related BTB domain containing 2 -6.9596 0.0000
50848 ENSMUSG00000019590 Cyb561 cytochrome b-561 -6.9537 0.0000
50847 ENSMUSG00000031065 Cdk16 cyclin-dependent kinase 16 -6.9473 0.0000
50846 ENSMUSG00000102112 1810041H14Rik RIKEN cDNA 1810041H14 gene -6.9413 0.0000
50845 ENSMUSG00000041765 Ubac2 ubiquitin associated domain containing 2 -6.9413 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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