Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147587
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147587
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP023116
SRP023116_M8
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Embryonic stem cell
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000048188
Gm8181
predicted gene 8181
7.7944
0.0000
2
ENSMUSG00000035246
Pcyt1b
phosphate cytidylyltransferase 1, choline, beta isoform
7.6933
0.0000
3
ENSMUSG00000067610
Klri1
killer cell lectin-like receptor family I member 1
7.5078
0.0000
4
ENSMUSG00000020706
Ftsj3
FtsJ RNA methyltransferase homolog 3 (E. coli)
7.4527
0.0000
5
ENSMUSG00000030720
Cln3
ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
7.2527
0.0000
6
ENSMUSG00000098540
Mir7059
microRNA 7059
7.2527
0.0000
7
ENSMUSG00000078280
Tas2r122
taste receptor, type 2, member 122
7.1699
0.0000
8
ENSMUSG00000079626
Rhox7b
reproductive homeobox 7B
7.1466
0.0000
9
ENSMUSG00000085839
Gm15949
predicted gene 15949
7.0589
0.0000
10
ENSMUSG00000070461
9230112E08Rik
RIKEN cDNA 9230112E08 gene
7.0423
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000014959
Gorasp2
golgi reassembly stacking protein 2
-3.5850
0.0000
47080
ENSMUSG00000014355
Anapc1
anaphase promoting complex subunit 1
-3.5850
0.6155
47079
ENSMUSG00000002825
Qtrt1
queuine tRNA-ribosyltransferase catalytic subunit 1
-3.5850
0.0004
47078
ENSMUSG00000035596
Mboat7
membrane bound O-acyltransferase domain containing 7
-3.5847
0.0000
47077
ENSMUSG00000059852
Kcng2
potassium voltage-gated channel, subfamily G, member 2
-3.5845
0.0000
47076
ENSMUSG00000010797
Wnt2
wingless-type MMTV integration site family, member 2
-3.5842
0.2689
47075
ENSMUSG00000106927
Gm43598
predicted gene 43598
-3.5841
0.0000
47074
ENSMUSG00000041132
N4bp2l1
NEDD4 binding protein 2-like 1
-3.5841
0.0000
47073
ENSMUSG00000024941
Scyl1
SCY1-like 1 (S. cerevisiae)
-3.5826
0.0000
47072
ENSMUSG00000086340
1810059C17Rik
RIKEN cDNA 1810059C17 gene
-3.5823
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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