Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147587

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147587 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP023116	SRP023116_M8	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Embryonic stem cell	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000048188	Gm8181	predicted gene 8181	7.7944	0.0000
2	ENSMUSG00000035246	Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	7.6933	0.0000
3	ENSMUSG00000067610	Klri1	killer cell lectin-like receptor family I member 1	7.5078	0.0000
4	ENSMUSG00000020706	Ftsj3	FtsJ RNA methyltransferase homolog 3 (E. coli)	7.4527	0.0000
5	ENSMUSG00000030720	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	7.2527	0.0000
6	ENSMUSG00000098540	Mir7059	microRNA 7059	7.2527	0.0000
7	ENSMUSG00000078280	Tas2r122	taste receptor, type 2, member 122	7.1699	0.0000
8	ENSMUSG00000079626	Rhox7b	reproductive homeobox 7B	7.1466	0.0000
9	ENSMUSG00000085839	Gm15949	predicted gene 15949	7.0589	0.0000
10	ENSMUSG00000070461	9230112E08Rik	RIKEN cDNA 9230112E08 gene	7.0423	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000014959	Gorasp2	golgi reassembly stacking protein 2	-3.5850	0.0000
47080	ENSMUSG00000014355	Anapc1	anaphase promoting complex subunit 1	-3.5850	0.6155
47079	ENSMUSG00000002825	Qtrt1	queuine tRNA-ribosyltransferase catalytic subunit 1	-3.5850	0.0004
47078	ENSMUSG00000035596	Mboat7	membrane bound O-acyltransferase domain containing 7	-3.5847	0.0000
47077	ENSMUSG00000059852	Kcng2	potassium voltage-gated channel, subfamily G, member 2	-3.5845	0.0000
47076	ENSMUSG00000010797	Wnt2	wingless-type MMTV integration site family, member 2	-3.5842	0.2689
47075	ENSMUSG00000106927	Gm43598	predicted gene 43598	-3.5841	0.0000
47074	ENSMUSG00000041132	N4bp2l1	NEDD4 binding protein 2-like 1	-3.5841	0.0000
47073	ENSMUSG00000024941	Scyl1	SCY1-like 1 (S. cerevisiae)	-3.5826	0.0000
47072	ENSMUSG00000086340	1810059C17Rik	RIKEN cDNA 1810059C17 gene	-3.5823	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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