Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM1147592
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147592
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP023116
SRP023116_M9
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Metaphase II oocyte
Mouse
Genitalia
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000074378
Bsph1
binder of sperm protein homolog 1
8.4890
0.0000
3
ENSMUSG00000110548
Gm45721
predicted gene 45721
7.5546
0.0000
4
ENSMUSG00000004667
Polr2e
polymerase (RNA) II (DNA directed) polypeptide E
7.5328
0.0000
5
ENSMUSG00000103920
Gm37897
predicted gene, 37897
7.5157
0.0000
6
ENSMUSG00000053399
Adamts18
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
7.4468
0.0000
7
ENSMUSG00000109501
Gm14377
predicted gene 14377
7.3923
0.0000
8
ENSMUSG00000110471
Gm45823
predicted gene 45823
7.3576
0.0000
9
ENSMUSG00000111539
Gm48372
predicted gene, 48372
7.3106
0.0000
10
ENSMUSG00000047654
Tssk6
testis-specific serine kinase 6
7.3083
0.0000
47072
ENSMUSG00000089214
Mir1931
microRNA 1931
-4.1699
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000112296
Gm47768
predicted gene, 47768
-4.1699
0.0446
47080
ENSMUSG00000111192
Gm47128
predicted gene, 47128
-4.1699
0.4079
47079
ENSMUSG00000106518
Gm42759
predicted gene 42759
-4.1699
0.0000
47078
ENSMUSG00000105112
Gm42778
predicted gene 42778
-4.1699
0.0000
47077
ENSMUSG00000104707
Gm43649
predicted gene 43649
-4.1699
0.0446
47076
ENSMUSG00000103553
Gm38218
predicted gene, 38218
-4.1699
0.0000
47075
ENSMUSG00000102276
2900069G24Rik
RIKEN cDNA 2900069G24 gene
-4.1699
0.0086
47074
ENSMUSG00000099375
Gm28187
predicted gene 28187
-4.1699
0.0086
47072
ENSMUSG00000089214
Mir1931
microRNA 1931
-4.1699
0.0000
10
ENSMUSG00000047654
Tssk6
testis-specific serine kinase 6
7.3083
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...