SHOGoiN Cell Methylome: GSM1147592
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147592 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP023116 | SRP023116_M9 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Metaphase II oocyte | Mouse | Genitalia | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000074378 | Bsph1 | binder of sperm protein homolog 1 | 8.4890 | 0.0000 |
| 3 | ENSMUSG00000110548 | Gm45721 | predicted gene 45721 | 7.5546 | 0.0000 |
| 4 | ENSMUSG00000004667 | Polr2e | polymerase (RNA) II (DNA directed) polypeptide E | 7.5328 | 0.0000 |
| 5 | ENSMUSG00000103920 | Gm37897 | predicted gene, 37897 | 7.5157 | 0.0000 |
| 6 | ENSMUSG00000053399 | Adamts18 | a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18 | 7.4468 | 0.0000 |
| 7 | ENSMUSG00000109501 | Gm14377 | predicted gene 14377 | 7.3923 | 0.0000 |
| 8 | ENSMUSG00000110471 | Gm45823 | predicted gene 45823 | 7.3576 | 0.0000 |
| 9 | ENSMUSG00000111539 | Gm48372 | predicted gene, 48372 | 7.3106 | 0.0000 |
| 10 | ENSMUSG00000047654 | Tssk6 | testis-specific serine kinase 6 | 7.3083 | 0.0000 |
| 50845 | ENSMUSG00000073486 | Gm10518 | predicted gene 10518 | -6.7018 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000049321 | Zfp2 | zinc finger protein 2 | -6.7249 | 0.0000 |
| 50853 | ENSMUSG00000019923 | Zwint | ZW10 interactor | -6.7245 | 0.0000 |
| 50852 | ENSMUSG00000025162 | Csnk1d | casein kinase 1, delta | -6.7239 | 0.0000 |
| 50851 | ENSMUSG00000106550 | Gm43646 | predicted gene 43646 | -6.7161 | 0.0000 |
| 50850 | ENSMUSG00000088046 | Gm23324 | predicted gene, 23324 | -6.7142 | 0.0000 |
| 50849 | ENSMUSG00000028678 | Kif2c | kinesin family member 2C | -6.7099 | 0.0000 |
| 50848 | ENSMUSG00000019969 | Psen1 | presenilin 1 | -6.7078 | 0.0000 |
| 50847 | ENSMUSG00000070489 | 4930527J03Rik | RIKEN cDNA 4930527J03 gene | -6.7056 | 0.0000 |
| 50846 | ENSMUSG00000098751 | Mir7672 | microRNA 7672 | -6.7050 | 0.0000 |
| 50845 | ENSMUSG00000073486 | Gm10518 | predicted gene 10518 | -6.7018 | 0.0000 |
