SHOGoiN Cell Methylome: GSM1147592
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147592 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP023116 | SRP023116_M9 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Metaphase II oocyte | Mouse | Genitalia | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000074378 | Bsph1 | Binder of sperm protein homolog 1 | 8.4890 | 0.0000 |
| 3 | ENSMUSG00000110548 | Gm45721 | predicted gene 45721 | 7.5546 | 0.0000 |
| 4 | ENSMUSG00000004667 | Polr2e | polymerase (RNA) II (DNA directed) polypeptide E | 7.5328 | 0.0000 |
| 5 | ENSMUSG00000103920 | Gm37897 | predicted gene, 37897 | 7.5157 | 0.0000 |
| 6 | ENSMUSG00000053399 | Adamts18 | A disintegrin and metalloproteinase with thrombospondin motifs 18 | 7.4468 | 0.0000 |
| 7 | ENSMUSG00000109501 | Gm14377 | predicted gene 14377 | 7.3923 | 0.0000 |
| 8 | ENSMUSG00000110471 | Gm45823 | predicted gene 45823 | 7.3576 | 0.0000 |
| 9 | ENSMUSG00000111539 | Gm48372 | predicted gene, 48372 | 7.3106 | 0.0000 |
| 10 | ENSMUSG00000047654 | Tssk6 | Testis-specific serine/threonine-protein kinase 6 | 7.3083 | 0.0000 |
| 50989 | ENSMUSG00000046470 | Sox18 | Transcription factor SOX-18 | -6.9918 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000076230 | Gm22758 | predicted gene, 22758 | -7.0334 | 0.0000 |
| 50997 | ENSMUSG00000061272 | Gm14173 | predicted gene 14173 | -7.0334 | 0.0000 |
| 50996 | ENSMUSG00000001819 | Hoxd13 | Homeobox protein Hox-D13 | -7.0302 | 0.0000 |
| 50995 | ENSMUSG00000029598 | Plbd2 | Putative phospholipase B-like 2 Putative phospholipase B-like 2 28 kDa form Putative phospholipase B-like 2 40 kDa form Putative phospholipase B-like 2 15 kDa form | -7.0244 | 0.0000 |
| 50994 | ENSMUSG00000032330 | Cox7a2 | Cytochrome c oxidase subunit 7A2, mitochondrial | -7.0210 | 0.0000 |
| 50993 | ENSMUSG00000003068 | Stk11 | Serine/threonine-protein kinase STK11 | -7.0162 | 0.0000 |
| 50992 | ENSMUSG00000014496 | Ankrd28 | Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A | -7.0011 | 0.0000 |
| 50991 | ENSMUSG00000024268 | Celf4 | CUGBP Elav-like family member 4 | -6.9955 | 0.0000 |
| 50990 | ENSMUSG00000110508 | Gm8940 | predicted gene 8940 | -6.9943 | 0.0000 |
| 50989 | ENSMUSG00000046470 | Sox18 | Transcription factor SOX-18 | -6.9918 | 0.0000 |
