SHOGoiN Cell Methylome: GSM1147593
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147593 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP023116 | SRP023116_M10 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Metaphase II oocyte | Mouse | Genitalia | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000055670 | Zzef1 | zinc finger, ZZ-type with EF hand domain 1 | 7.9744 | 0.0000 |
| 2 | ENSMUSG00000022031 | Elp3 | Elongator complex protein 3 | 7.9687 | 0.0000 |
| 3 | ENSMUSG00000057454 | Lypd3 | Ly6/PLAUR domain-containing protein 3 | 7.9009 | 0.0000 |
| 4 | ENSMUSG00000102862 | Gm37640 | predicted gene, 37640 | 7.9009 | 0.0000 |
| 5 | ENSMUSG00000061065 | H2al1o | NA | 7.8642 | 0.0000 |
| 6 | ENSMUSG00000098212 | Gm38706 | predicted gene, 38706 | 7.7611 | 0.0000 |
| 7 | ENSMUSG00000085376 | Gm14508 | predicted gene 14508 | 7.7376 | 0.0000 |
| 8 | ENSMUSG00000038751 | Ptk6 | PTK6 protein tyrosine kinase 6 | 7.7108 | 0.0000 |
| 9 | ENSMUSG00000028671 | Gale | Mus musculus galactose-4-epimerase, UDP (Gale), mRNA. | 7.7107 | 0.0000 |
| 10 | ENSMUSG00000065523 | Mir192 | microRNA 192 | 7.6962 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000106391 | Gm42690 | predicted gene 42690 | -7.2479 | 0.0000 |
| 50997 | ENSMUSG00000065429 | Mir345 | microRNA 345 | -7.2365 | 0.0000 |
| 50996 | ENSMUSG00000031314 | Taf1 | TATA-box binding protein associated factor 1 | -7.2288 | 0.0000 |
| 50995 | ENSMUSG00000020521 | Rnft1 | E3 ubiquitin-protein ligase RNFT1 | -7.2285 | 0.0000 |
| 50994 | ENSMUSG00000020284 | 1810043G02Rik | chromosome 21 open reading frame 2 | -7.2276 | 0.0000 |
| 50993 | ENSMUSG00000069089 | Cdk7 | Cyclin-dependent kinase 7 | -7.2197 | 0.0000 |
| 50992 | ENSMUSG00000098736 | Gm27838 | predicted gene, 27838 | -7.2192 | 0.0000 |
| 50991 | ENSMUSG00000096946 | Fmr1os | NA | -7.2192 | 0.0000 |
| 50990 | ENSMUSG00000097014 | Gm26706 | predicted gene, 26706 | -7.2086 | 0.0000 |
| 50989 | ENSMUSG00000090553 | Snrpe | small nuclear ribonucleoprotein E | -7.2086 | 0.0000 |
