Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147593
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147593
Profile download
5030203000000000000000-761
Sequence Read Archive
SRP023116
SRP023116_M10
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Metaphase II oocyte
Mouse
Genitalia
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000055670
Zzef1
zinc finger, ZZ-type with EF hand domain 1
7.9744
0.0000
2
ENSMUSG00000022031
Elp3
elongator acetyltransferase complex subunit 3
7.9687
0.0000
3
ENSMUSG00000057454
Lypd3
Ly6/Plaur domain containing 3
7.9009
0.0000
4
ENSMUSG00000102862
Gm37640
predicted gene, 37640
7.9009
0.0000
5
ENSMUSG00000061065
H2al1o
H2A histone family member L1O
7.8642
0.0000
6
ENSMUSG00000098212
Gm53052
predicted gene, 53052
7.7611
0.0000
7
ENSMUSG00000085376
Gm14508
predicted gene 14508
7.7376
0.0000
8
ENSMUSG00000038751
Ptk6
PTK6 protein tyrosine kinase 6
7.7108
0.0000
9
ENSMUSG00000028671
Gale
galactose-4-epimerase, UDP
7.7107
0.0000
10
ENSMUSG00000065523
Mir192
microRNA 192
7.6962
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000027314
Dll4
delta like canonical Notch ligand 4
-3.3135
0.0000
47080
ENSMUSG00000031060
Rbm10
RNA binding motif protein 10
-3.3128
0.3885
47079
ENSMUSG00000031059
Ndufb11
NADH:ubiquinone oxidoreductase subunit B11
-3.3128
0.3885
47078
ENSMUSG00000008892
Vdac3
voltage-dependent anion channel 3
-3.3113
0.0000
47077
ENSMUSG00000059486
Kbtbd2
kelch repeat and BTB (POZ) domain containing 2
-3.3104
0.0000
47076
ENSMUSG00000035781
R3hdm4
R3H domain containing 4
-3.3096
0.0000
47075
ENSMUSG00000110193
Gm45452
predicted gene 45452
-3.3088
0.0000
47074
ENSMUSG00000109938
Gm6009
predicted gene 6009
-3.3088
0.0000
47073
ENSMUSG00000099825
1810012K16Rik
RIKEN cDNA 1810012K16 gene
-3.3088
0.0000
47072
ENSMUSG00000083943
Gm11483
predicted gene 11483
-3.3078
0.0053
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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