Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147593

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147593 Profile download	5030203000000000000000-761	Sequence Read Archive	SRP023116	SRP023116_M10	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Metaphase II oocyte	Mouse	Genitalia	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000055670	Zzef1	zinc finger, ZZ-type with EF hand domain 1	7.9744	0.0000
2	ENSMUSG00000022031	Elp3	elongator acetyltransferase complex subunit 3	7.9687	0.0000
3	ENSMUSG00000057454	Lypd3	Ly6/Plaur domain containing 3	7.9009	0.0000
4	ENSMUSG00000102862	Gm37640	predicted gene, 37640	7.9009	0.0000
5	ENSMUSG00000061065	H2al1o	H2A histone family member L1O	7.8642	0.0000
6	ENSMUSG00000098212	Gm53052	predicted gene, 53052	7.7611	0.0000
7	ENSMUSG00000085376	Gm14508	predicted gene 14508	7.7376	0.0000
8	ENSMUSG00000038751	Ptk6	PTK6 protein tyrosine kinase 6	7.7108	0.0000
9	ENSMUSG00000028671	Gale	galactose-4-epimerase, UDP	7.7107	0.0000
10	ENSMUSG00000065523	Mir192	microRNA 192	7.6962	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000027314	Dll4	delta like canonical Notch ligand 4	-3.3135	0.0000
47080	ENSMUSG00000031060	Rbm10	RNA binding motif protein 10	-3.3128	0.3885
47079	ENSMUSG00000031059	Ndufb11	NADH:ubiquinone oxidoreductase subunit B11	-3.3128	0.3885
47078	ENSMUSG00000008892	Vdac3	voltage-dependent anion channel 3	-3.3113	0.0000
47077	ENSMUSG00000059486	Kbtbd2	kelch repeat and BTB (POZ) domain containing 2	-3.3104	0.0000
47076	ENSMUSG00000035781	R3hdm4	R3H domain containing 4	-3.3096	0.0000
47075	ENSMUSG00000110193	Gm45452	predicted gene 45452	-3.3088	0.0000
47074	ENSMUSG00000109938	Gm6009	predicted gene 6009	-3.3088	0.0000
47073	ENSMUSG00000099825	1810012K16Rik	RIKEN cDNA 1810012K16 gene	-3.3088	0.0000
47072	ENSMUSG00000083943	Gm11483	predicted gene 11483	-3.3078	0.0053

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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