Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147593


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5030203000000000000000-761Sequence Read ArchiveSRP023116SRP023116_M10Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMetaphase II oocyteMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000055670 Zzef1 zinc finger, ZZ-type with EF hand domain 1 7.9744 0.0000
2 ENSMUSG00000022031 Elp3 elongator acetyltransferase complex subunit 3 7.9687 0.0000
3 ENSMUSG00000057454 Lypd3 Ly6/Plaur domain containing 3 7.9009 0.0000
4 ENSMUSG00000102862 Gm37640 predicted gene, 37640 7.9009 0.0000
5 ENSMUSG00000061065 H2al1o H2A histone family member L1O 7.8642 0.0000
6 ENSMUSG00000098212 Gm53052 predicted gene, 53052 7.7611 0.0000
7 ENSMUSG00000085376 Gm14508 predicted gene 14508 7.7376 0.0000
8 ENSMUSG00000038751 Ptk6 PTK6 protein tyrosine kinase 6 7.7108 0.0000
9 ENSMUSG00000028671 Gale galactose-4-epimerase, UDP 7.7107 0.0000
10 ENSMUSG00000065523 Mir192 microRNA 192 7.6962 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000027314 Dll4 delta like canonical Notch ligand 4 -3.3135 0.0000
47080 ENSMUSG00000031060 Rbm10 RNA binding motif protein 10 -3.3128 0.3885
47079 ENSMUSG00000031059 Ndufb11 NADH:ubiquinone oxidoreductase subunit B11 -3.3128 0.3885
47078 ENSMUSG00000008892 Vdac3 voltage-dependent anion channel 3 -3.3113 0.0000
47077 ENSMUSG00000059486 Kbtbd2 kelch repeat and BTB (POZ) domain containing 2 -3.3104 0.0000
47076 ENSMUSG00000035781 R3hdm4 R3H domain containing 4 -3.3096 0.0000
47075 ENSMUSG00000110193 Gm45452 predicted gene 45452 -3.3088 0.0000
47074 ENSMUSG00000109938 Gm6009 predicted gene 6009 -3.3088 0.0000
47073 ENSMUSG00000099825 1810012K16Rik RIKEN cDNA 1810012K16 gene -3.3088 0.0000
47072 ENSMUSG00000083943 Gm11483 predicted gene 11483 -3.3078 0.0053

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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