SHOGoiN Cell Methylome: GSM1147593
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147593 Profile download | 5030203000000000000000-761 | Sequence Read Archive | SRP023116 | SRP023116_M10 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Metaphase II oocyte | Mouse | Genitalia | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000055670 | Zzef1 | zinc finger, ZZ-type with EF hand domain 1 | 7.9744 | 0.0000 |
| 2 | ENSMUSG00000022031 | Elp3 | elongator acetyltransferase complex subunit 3 | 7.9687 | 0.0000 |
| 3 | ENSMUSG00000057454 | Lypd3 | Ly6/Plaur domain containing 3 | 7.9009 | 0.0000 |
| 4 | ENSMUSG00000102862 | Gm37640 | predicted gene, 37640 | 7.9009 | 0.0000 |
| 5 | ENSMUSG00000061065 | H2al1o | H2A histone family member L1O | 7.8642 | 0.0000 |
| 6 | ENSMUSG00000098212 | Gm38706 | predicted gene, 38706 | 7.7611 | 0.0000 |
| 7 | ENSMUSG00000085376 | Gm14508 | predicted gene 14508 | 7.7376 | 0.0000 |
| 8 | ENSMUSG00000038751 | Ptk6 | PTK6 protein tyrosine kinase 6 | 7.7108 | 0.0000 |
| 9 | ENSMUSG00000028671 | Gale | galactose-4-epimerase, UDP | 7.7107 | 0.0000 |
| 10 | ENSMUSG00000065523 | Mir192 | microRNA 192 | 7.6962 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000027002 | Nckap1 | NCK-associated protein 1 | -6.8313 | 0.0000 |
| 50853 | ENSMUSG00000084969 | Gm11205 | predicted gene 11205 | -6.8266 | 0.0000 |
| 50852 | ENSMUSG00000065395 | Mir193a | microRNA 193a | -6.8266 | 0.0000 |
| 50851 | ENSMUSG00000025017 | Pik3ap1 | phosphoinositide-3-kinase adaptor protein 1 | -6.8216 | 0.0000 |
| 50850 | ENSMUSG00000033632 | AW554918 | expressed sequence AW554918 | -6.8181 | 0.0000 |
| 50849 | ENSMUSG00000024269 | Tpgs2 | tubulin polyglutamylase complex subunit 2 | -6.8181 | 0.0000 |
| 50848 | ENSMUSG00000029387 | Gtf2h3 | general transcription factor IIH, polypeptide 3 | -6.8148 | 0.0000 |
| 50847 | ENSMUSG00000055407 | Map6 | microtubule-associated protein 6 | -6.8138 | 0.0000 |
| 50846 | ENSMUSG00000045232 | Rln3 | relaxin 3 | -6.8137 | 0.0000 |
| 50845 | ENSMUSG00000005465 | Il27ra | interleukin 27 receptor, alpha | -6.8137 | 0.0000 |
