Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147594

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147594 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP023116	SRP023116_M11	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	First polar body (Zygote)	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000024953	Prdx5	peroxiredoxin 5	7.7814	0.0000
2	ENSMUSG00000038812	Trmt112	tRNA methyltransferase 11-2	7.7814	0.0000
3	ENSMUSG00000063511	Snrnp70	small nuclear ribonucleoprotein 70 (U1)	7.5216	0.0000
4	ENSMUSG00000101398	Gm2617	predicted gene 2617	7.5058	0.0000
5	ENSMUSG00000030785	Cox6a2	cytochrome c oxidase subunit 6A2	7.4998	0.0000
6	ENSMUSG00000045374	Wdr81	WD repeat domain 81	7.4660	0.0000
7	ENSMUSG00000089627	Gm16228	predicted gene 16228	7.2574	0.0000
8	ENSMUSG00000026219	Trip12	thyroid hormone receptor interactor 12	7.1997	0.0000
9	ENSMUSG00000038564	Ift172	intraflagellar transport 172	7.0875	0.0000
10	ENSMUSG00000029470	P2rx4	purinergic receptor P2X, ligand-gated ion channel 4	7.0839	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000110165	Btf3-ps18	basic transcription factor 3, pseudogene 18	-3.6748	0.0000
47080	ENSMUSG00000030588	Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	-3.6746	0.0000
47079	ENSMUSG00000071652	Ints5	integrator complex subunit 5	-3.6742	0.4596
47078	ENSMUSG00000027206	Cops2	COP9 signalosome subunit 2	-3.6724	0.0000
47077	ENSMUSG00000029175	Slc35f6	solute carrier family 35, member F6	-3.6714	0.0000
47076	ENSMUSG00000031758	Cdyl2	chromodomain protein, Y chromosome-like 2	-3.6713	0.0042
47075	ENSMUSG00000021033	Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	-3.6711	0.0000
47074	ENSMUSG00000097002	Gm2670	predicted gene 2670	-3.6703	0.0000
47073	ENSMUSG00000095512	Gm17222	predicted gene 17222	-3.6697	0.0003
47072	ENSMUSG00000036062	Phf24	PHD finger protein 24	-3.6689	0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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