SHOGoiN Cell Methylome: GSM1147594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147594


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M11Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000024953 Prdx5 peroxiredoxin 5 7.7814 0.0000
2 ENSMUSG00000038812 Trmt112 tRNA methyltransferase 11-2 7.7814 0.0000
3 ENSMUSG00000063511 Snrnp70 small nuclear ribonucleoprotein 70 (U1) 7.5216 0.0000
4 ENSMUSG00000101398 Gm2617 predicted gene 2617 7.5058 0.0000
5 ENSMUSG00000030785 Cox6a2 cytochrome c oxidase subunit 6A2 7.4998 0.0000
6 ENSMUSG00000045374 Wdr81 WD repeat domain 81 7.4660 0.0000
7 ENSMUSG00000089627 Gm16228 predicted gene 16228 7.2574 0.0000
8 ENSMUSG00000026219 Trip12 thyroid hormone receptor interactor 12 7.1997 0.0000
9 ENSMUSG00000038564 Ift172 intraflagellar transport 172 7.0875 0.0000
10 ENSMUSG00000029470 P2rx4 purinergic receptor P2X, ligand-gated ion channel 4 7.0839 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000110291 Gm37419 predicted gene, 37419 -6.4594 0.0000
50853 ENSMUSG00000022508 Bcl6 B cell leukemia/lymphoma 6 -6.4594 0.0000
50852 ENSMUSG00000070476 Fam217b family with sequence similarity 217, member B -6.4553 0.0000
50851 ENSMUSG00000049999 Ppp1r3d protein phosphatase 1, regulatory subunit 3D -6.4553 0.0000
50850 ENSMUSG00000048895 Cdk5r1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) -6.4527 0.0000
50849 ENSMUSG00000029569 Tmem168 transmembrane protein 168 -6.4499 0.0000
50848 ENSMUSG00000032125 Robo4 roundabout guidance receptor 4 -6.4429 0.0000
50847 ENSMUSG00000037275 Gemin5 gem nuclear organelle associated protein 5 -6.4415 0.0000
50846 ENSMUSG00000037999 Arap2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 -6.4411 0.0000
50845 ENSMUSG00000012443 Kif11 kinesin family member 11 -6.4346 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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