SHOGoiN Cell Methylome: GSM1147594
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147594 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP023116 | SRP023116_M11 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | First polar body (Zygote) | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000024953 | Prdx5 | peroxiredoxin 5 | 7.7814 | 0.0000 |
| 2 | ENSMUSG00000038812 | Trmt112 | tRNA methyltransferase 11-2 | 7.7814 | 0.0000 |
| 3 | ENSMUSG00000063511 | Snrnp70 | small nuclear ribonucleoprotein 70 (U1) | 7.5216 | 0.0000 |
| 4 | ENSMUSG00000101398 | Gm2617 | predicted gene 2617 | 7.5058 | 0.0000 |
| 5 | ENSMUSG00000030785 | Cox6a2 | cytochrome c oxidase subunit 6A2 | 7.4998 | 0.0000 |
| 6 | ENSMUSG00000045374 | Wdr81 | WD repeat domain 81 | 7.4660 | 0.0000 |
| 7 | ENSMUSG00000089627 | Gm16228 | predicted gene 16228 | 7.2574 | 0.0000 |
| 8 | ENSMUSG00000026219 | Trip12 | thyroid hormone receptor interactor 12 | 7.1997 | 0.0000 |
| 9 | ENSMUSG00000038564 | Ift172 | intraflagellar transport 172 | 7.0875 | 0.0000 |
| 10 | ENSMUSG00000029470 | P2rx4 | purinergic receptor P2X, ligand-gated ion channel 4 | 7.0839 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000110291 | Gm37419 | predicted gene, 37419 | -6.4594 | 0.0000 |
| 50853 | ENSMUSG00000022508 | Bcl6 | B cell leukemia/lymphoma 6 | -6.4594 | 0.0000 |
| 50852 | ENSMUSG00000070476 | Fam217b | family with sequence similarity 217, member B | -6.4553 | 0.0000 |
| 50851 | ENSMUSG00000049999 | Ppp1r3d | protein phosphatase 1, regulatory subunit 3D | -6.4553 | 0.0000 |
| 50850 | ENSMUSG00000048895 | Cdk5r1 | cyclin-dependent kinase 5, regulatory subunit 1 (p35) | -6.4527 | 0.0000 |
| 50849 | ENSMUSG00000029569 | Tmem168 | transmembrane protein 168 | -6.4499 | 0.0000 |
| 50848 | ENSMUSG00000032125 | Robo4 | roundabout guidance receptor 4 | -6.4429 | 0.0000 |
| 50847 | ENSMUSG00000037275 | Gemin5 | gem nuclear organelle associated protein 5 | -6.4415 | 0.0000 |
| 50846 | ENSMUSG00000037999 | Arap2 | ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 | -6.4411 | 0.0000 |
| 50845 | ENSMUSG00000012443 | Kif11 | kinesin family member 11 | -6.4346 | 0.0000 |
