Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM1147594
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147594
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M11
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
First polar body (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000024953
Prdx5
peroxiredoxin 5
7.7814
0.0000
2
ENSMUSG00000038812
Trmt112
tRNA methyltransferase 11-2
7.7814
0.0000
3
ENSMUSG00000063511
Snrnp70
small nuclear ribonucleoprotein 70 (U1)
7.5216
0.0000
4
ENSMUSG00000101398
Gm2617
predicted gene 2617
7.5058
0.0000
5
ENSMUSG00000030785
Cox6a2
cytochrome c oxidase subunit 6A2
7.4998
0.0000
6
ENSMUSG00000045374
Wdr81
WD repeat domain 81
7.4660
0.0000
7
ENSMUSG00000089627
Gm16228
predicted gene 16228
7.2574
0.0000
8
ENSMUSG00000026219
Trip12
thyroid hormone receptor interactor 12
7.1997
0.0000
9
ENSMUSG00000038564
Ift172
intraflagellar transport 172
7.0875
0.0000
10
ENSMUSG00000029470
P2rx4
purinergic receptor P2X, ligand-gated ion channel 4
7.0839
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000110165
Btf3-ps18
basic transcription factor 3, pseudogene 18
-3.6748
0.0000
47080
ENSMUSG00000030588
Yif1b
Yip1 interacting factor homolog B (S. cerevisiae)
-3.6746
0.0000
47079
ENSMUSG00000071652
Ints5
integrator complex subunit 5
-3.6742
0.4596
47078
ENSMUSG00000027206
Cops2
COP9 signalosome subunit 2
-3.6724
0.0000
47077
ENSMUSG00000029175
Slc35f6
solute carrier family 35, member F6
-3.6714
0.0000
47076
ENSMUSG00000031758
Cdyl2
chromodomain protein, Y chromosome-like 2
-3.6713
0.0042
47075
ENSMUSG00000021033
Gstz1
glutathione transferase zeta 1 (maleylacetoacetate isomerase)
-3.6711
0.0000
47074
ENSMUSG00000097002
Gm2670
predicted gene 2670
-3.6703
0.0000
47073
ENSMUSG00000095512
Gm17222
predicted gene 17222
-3.6697
0.0003
47072
ENSMUSG00000036062
Phf24
PHD finger protein 24
-3.6689
0.0001
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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