SHOGoiN Cell Methylome: GSM1147595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147595


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M12Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 8.5699 0.0000
3 ENSMUSG00000091306 Gm17606 predicted gene, 17606 8.5229 0.0000
4 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 8.4676 0.0000
5 ENSMUSG00000073255 Gm14632 predicted gene 14632 8.2992 0.0000
6 ENSMUSG00000053898 Ech1 enoyl coenzyme A hydratase 1, peroxisomal 8.2605 0.0000
7 ENSMUSG00000055818 A230083G16Rik RIKEN cDNA A230083G16 gene 8.1983 0.0000
8 ENSMUSG00000036835 Psenen presenilin enhancer gamma secretase subunit 8.1342 0.0000
9 ENSMUSG00000036845 Lin37 lin-37 homolog (C. elegans) 8.1342 0.0000
10 ENSMUSG00000078765 U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 8.1342 0.0000
50845 ENSMUSG00000086287 Gm15972 predicted gene 15972 -6.8948 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000028381 Ugcg UDP-glucose ceramide glucosyltransferase -6.9121 0.0000
50853 ENSMUSG00000103906 Tigd5 tigger transposable element derived 5 -6.9088 0.0000
50852 ENSMUSG00000108592 Gm38973 predicted gene, 38973 -6.9069 0.0000
50851 ENSMUSG00000086917 Gm11630 predicted gene 11630 -6.9067 0.0000
50850 ENSMUSG00000070336 Fbxo47 F-box protein 47 -6.9067 0.0000
50849 ENSMUSG00000000959 Oxa1l oxidase assembly 1-like -6.9052 0.0000
50848 ENSMUSG00000031483 Erlin2 ER lipid raft associated 2 -6.9030 0.0000
50847 ENSMUSG00000085841 Gm4954 predicted gene 4954 -6.9009 0.0000
50846 ENSMUSG00000041347 Bdkrb1 bradykinin receptor, beta 1 -6.8987 0.0000
50845 ENSMUSG00000086287 Gm15972 predicted gene 15972 -6.8948 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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