Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147595


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M12Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFirst polar body (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 8.5699 0.0000
3 ENSMUSG00000091306 Gm17606 predicted gene, 17606 8.5229 0.0000
4 ENSMUSG00000028280 Gabrr1 gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 8.4676 0.0000
5 ENSMUSG00000073255 Gm14632 predicted gene 14632 8.2992 0.0000
6 ENSMUSG00000053898 Ech1 enoyl coenzyme A hydratase 1, peroxisomal 8.2605 0.0000
7 ENSMUSG00000055818 A230083G16Rik RIKEN cDNA A230083G16 gene 8.1983 0.0000
8 ENSMUSG00000036835 Psenen presenilin enhancer gamma secretase subunit 8.1342 0.0000
9 ENSMUSG00000036845 Lin37 lin-37 homolog (C. elegans) 8.1342 0.0000
10 ENSMUSG00000078765 U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 8.1342 0.0000
47072 ENSMUSG00000032089 Il10ra interleukin 10 receptor, alpha -4.5236 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000026466 Tor1aip1 torsin A interacting protein 1 -4.5255 0.0000
47080 ENSMUSG00000008036 Ap2s1 adaptor-related protein complex 2, sigma 1 subunit -4.5253 0.0000
47079 ENSMUSG00000107728 Gm38910 predicted gene, 38910 -4.5249 0.0000
47078 ENSMUSG00000053441 Adamts19 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19 -4.5246 0.0000
47077 ENSMUSG00000032216 Nedd4 neural precursor cell expressed, developmentally down-regulated 4 -4.5240 0.0000
47076 ENSMUSG00000038567 Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 -4.5238 0.0000
47074 ENSMUSG00000040632 Nrl neural retina leucine zipper gene -4.5237 0.0000
47073 ENSMUSG00000098361 Mir7086 microRNA 7086 -4.5236 0.0000
47072 ENSMUSG00000032089 Il10ra interleukin 10 receptor, alpha -4.5236 0.0000
10 ENSMUSG00000078765 U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 8.1342 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...