Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147596

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147596 Profile download	5090101000001000000000-236	Sequence Read Archive	SRP023116	SRP023116_M13	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Sperm	Mouse	Genitalia	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000011118	Panx3	pannexin 3	8.2877	0.0000
2	ENSMUSG00000082312	Gm11996	predicted gene 11996	8.0980	0.0000
3	ENSMUSG00000028069	Gpatch4	G patch domain containing 4	8.0112	0.0000
4	ENSMUSG00000107931	Gm44475	predicted gene, 44475	7.9188	0.0000
6	ENSMUSG00000071151	Gm4799	predicted gene 4799	7.8455	0.0000
7	ENSMUSG00000070972	Dnajc25	DnaJ heat shock protein family (Hsp40) member C25	7.7682	0.0000
8	ENSMUSG00000092345	Gm20503	predicted gene 20503	7.7682	0.0000
9	ENSMUSG00000038044	Cct8l1	chaperonin containing TCP1, subunit 8 (theta)-like 1	7.7616	0.0000
10	ENSMUSG00000037400	Atp11b	ATPase, class VI, type 11B	7.7415	0.0000
47072	ENSMUSG00000048106	4632415L05Rik	RIKEN cDNA 4632415L05 gene	-3.7004	0.2548

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000097738	4930445N18Rik	RIKEN cDNA 4930445N18 gene	-3.7004	0.0008
47080	ENSMUSG00000086206	Gm13783	predicted gene 13783	-3.7004	0.0062
47079	ENSMUSG00000084957	Bbip1	BBSome interacting protein 1	-3.7004	0.0495
47078	ENSMUSG00000079608	Stard6	StAR-related lipid transfer (START) domain containing 6	-3.7004	0.0029
47077	ENSMUSG00000074361	C5ar2	complement component 5a receptor 2	-3.7004	0.0000
47076	ENSMUSG00000070109	Mir497b	microRNA 497b	-3.7004	0.0062
47075	ENSMUSG00000065411	Mir195a	microRNA 195a	-3.7004	0.0062
47074	ENSMUSG00000063672	Nkx6-3	NK6 homeobox 3	-3.7004	0.0139
47073	ENSMUSG00000055943	Emc7	ER membrane protein complex subunit 7	-3.7004	0.0062
47072	ENSMUSG00000048106	4632415L05Rik	RIKEN cDNA 4632415L05 gene	-3.7004	0.2548

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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