Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147596
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147596
Profile download
5090101000001000000000-236
Sequence Read Archive
SRP023116
SRP023116_M13
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Sperm
Mouse
Genitalia
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000011118
Panx3
pannexin 3
8.2877
0.0000
2
ENSMUSG00000082312
Gm11996
predicted gene 11996
8.0980
0.0000
3
ENSMUSG00000028069
Gpatch4
G patch domain containing 4
8.0112
0.0000
4
ENSMUSG00000107931
Gm44475
predicted gene, 44475
7.9188
0.0000
6
ENSMUSG00000071151
Gm4799
predicted gene 4799
7.8455
0.0000
7
ENSMUSG00000070972
Dnajc25
DnaJ heat shock protein family (Hsp40) member C25
7.7682
0.0000
8
ENSMUSG00000092345
Gm20503
predicted gene 20503
7.7682
0.0000
9
ENSMUSG00000038044
Cct8l1
chaperonin containing TCP1, subunit 8 (theta)-like 1
7.7616
0.0000
10
ENSMUSG00000037400
Atp11b
ATPase, class VI, type 11B
7.7415
0.0000
47072
ENSMUSG00000048106
4632415L05Rik
RIKEN cDNA 4632415L05 gene
-3.7004
0.2548
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000097738
4930445N18Rik
RIKEN cDNA 4930445N18 gene
-3.7004
0.0008
47080
ENSMUSG00000086206
Gm13783
predicted gene 13783
-3.7004
0.0062
47079
ENSMUSG00000084957
Bbip1
BBSome interacting protein 1
-3.7004
0.0495
47078
ENSMUSG00000079608
Stard6
StAR-related lipid transfer (START) domain containing 6
-3.7004
0.0029
47077
ENSMUSG00000074361
C5ar2
complement component 5a receptor 2
-3.7004
0.0000
47076
ENSMUSG00000070109
Mir497b
microRNA 497b
-3.7004
0.0062
47075
ENSMUSG00000065411
Mir195a
microRNA 195a
-3.7004
0.0062
47074
ENSMUSG00000063672
Nkx6-3
NK6 homeobox 3
-3.7004
0.0139
47073
ENSMUSG00000055943
Emc7
ER membrane protein complex subunit 7
-3.7004
0.0062
47072
ENSMUSG00000048106
4632415L05Rik
RIKEN cDNA 4632415L05 gene
-3.7004
0.2548
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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