Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147596


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M13Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000011118 Panx3 pannexin 3 8.2877 0.0000
2 ENSMUSG00000082312 Gm11996 predicted gene 11996 8.0980 0.0000
3 ENSMUSG00000028069 Gpatch4 G patch domain containing 4 8.0112 0.0000
4 ENSMUSG00000107931 Gm44475 predicted gene, 44475 7.9188 0.0000
6 ENSMUSG00000071151 Gm4799 predicted gene 4799 7.8455 0.0000
7 ENSMUSG00000070972 Dnajc25 DnaJ heat shock protein family (Hsp40) member C25 7.7682 0.0000
8 ENSMUSG00000092345 Gm20503 predicted gene 20503 7.7682 0.0000
9 ENSMUSG00000038044 Cct8l1 chaperonin containing TCP1, subunit 8 (theta)-like 1 7.7616 0.0000
10 ENSMUSG00000037400 Atp11b ATPase, class VI, type 11B 7.7415 0.0000
47072 ENSMUSG00000048106 4632415L05Rik RIKEN cDNA 4632415L05 gene -3.7004 0.2548

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000097738 4930445N18Rik RIKEN cDNA 4930445N18 gene -3.7004 0.0008
47080 ENSMUSG00000086206 Gm13783 predicted gene 13783 -3.7004 0.0062
47079 ENSMUSG00000084957 Bbip1 BBSome interacting protein 1 -3.7004 0.0495
47078 ENSMUSG00000079608 Stard6 StAR-related lipid transfer (START) domain containing 6 -3.7004 0.0029
47077 ENSMUSG00000074361 C5ar2 complement component 5a receptor 2 -3.7004 0.0000
47076 ENSMUSG00000070109 Mir497b microRNA 497b -3.7004 0.0062
47075 ENSMUSG00000065411 Mir195a microRNA 195a -3.7004 0.0062
47074 ENSMUSG00000063672 Nkx6-3 NK6 homeobox 3 -3.7004 0.0139
47073 ENSMUSG00000055943 Emc7 ER membrane protein complex subunit 7 -3.7004 0.0062
47072 ENSMUSG00000048106 4632415L05Rik RIKEN cDNA 4632415L05 gene -3.7004 0.2548

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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