SHOGoiN Cell Methylome: GSM1147596
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147596 Profile download | 5090101000001000000000-236 | Sequence Read Archive | SRP023116 | SRP023116_M13 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Sperm | Mouse | Genitalia | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000011118 | Panx3 | Pannexin-3 | 8.2877 | 0.0000 |
| 2 | ENSMUSG00000082312 | Gm11996 | predicted gene 11996 | 8.0980 | 0.0000 |
| 3 | ENSMUSG00000028069 | Gpatch4 | G patch domain-containing protein 4 | 8.0112 | 0.0000 |
| 4 | ENSMUSG00000107931 | Gm44475 | predicted gene, 44475 | 7.9188 | 0.0000 |
| 5 | ENSMUSG00000096941 | Gm26720 | predicted gene, 26720 | 7.8948 | 0.0000 |
| 6 | ENSMUSG00000071151 | Gm4799 | predicted gene 4799 | 7.8455 | 0.0000 |
| 7 | ENSMUSG00000070972 | Dnajc25 | DnaJ homolog subfamily C member 25 | 7.7682 | 0.0000 |
| 8 | ENSMUSG00000092345 | Gm20503 | DNAJC25-GNG10 readthrough | 7.7682 | 0.0000 |
| 9 | ENSMUSG00000038044 | Cct8l1 | chaperonin containing TCP1, subunit 8 (theta)-like 1 | 7.7616 | 0.0000 |
| 10 | ENSMUSG00000037400 | Atp11b | ATPase, class VI, type 11B | 7.7415 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000102612 | Gm37845 | predicted gene, 37845 | -7.1764 | 0.0000 |
| 50997 | ENSMUSG00000102537 | Gm37224 | predicted gene, 37224 | -7.1764 | 0.0000 |
| 50996 | ENSMUSG00000049576 | Zfa-ps | zinc finger protein, autosomal, pseudogene | -7.1725 | 0.0000 |
| 50995 | ENSMUSG00000084543 | Gm23184 | predicted gene, 23184 | -7.1714 | 0.0000 |
| 50994 | ENSMUSG00000020614 | Fam20a | Pseudokinase FAM20A | -7.1676 | 0.0000 |
| 50993 | ENSMUSG00000046714 | Foxc2 | Forkhead box protein C2 | -7.1626 | 0.0000 |
| 50992 | ENSMUSG00000085653 | Gm15179 | predicted gene 15179 | -7.1599 | 0.0000 |
| 50991 | ENSMUSG00000020029 | Nudt4 | Mus musculus nudix (nucleoside diphosphate linked moiety X)-type motif 4 (Nudt4), transcript variant 1, mRNA. | -7.1595 | 0.0000 |
| 50990 | ENSMUSG00000010825 | Grid2ip | Mus musculus glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 (Grid2ip), transcript variant 3, mRNA. | -7.1565 | 0.0000 |
| 50989 | ENSMUSG00000087993 | Mir1982 | microRNA 1982 | -7.1562 | 0.0000 |
