SHOGoiN Cell Methylome: GSM1147597

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147597


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M14Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000084274 Gm12504 predicted pseudogene 12504 7.9307 0.0000
2 ENSMUSG00000038608 Dock10 dedicator of cytokinesis 10 7.8455 0.0000
3 ENSMUSG00000103192 Gm37645 predicted gene, 37645 7.8455 0.0000
4 ENSMUSG00000020216 Jsrp1 junctional sarcoplasmic reticulum protein 1 7.8237 0.0000
5 ENSMUSG00000024738 Pga5 pepsinogen 5, group I 7.8009 0.0000
6 ENSMUSG00000109453 4930405G09Rik RIKEN cDNA 4930405G09 gene 7.7616 0.0000
7 ENSMUSG00000108849 Gm35147 predicted gene, 35147 7.5673 0.0000
8 ENSMUSG00000105032 Gm43117 predicted gene 43117 7.5275 0.0000
9 ENSMUSG00000043782 Bicdl2 BICD family like cargo adaptor 2 7.4757 0.0000
10 ENSMUSG00000027380 Acoxl acyl-Coenzyme A oxidase-like 7.3750 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000041360 Pum3 pumilio RNA-binding family member 3 -7.0108 0.0000
50853 ENSMUSG00000042414 Prdm14 PR domain containing 14 -7.0071 0.0000
50852 ENSMUSG00000022009 Nufip1 nuclear fragile X mental retardation protein interacting protein 1 -7.0063 0.0000
50851 ENSMUSG00000050471 Fam118b family with sequence similarity 118, member B -7.0059 0.0000
50850 ENSMUSG00000032044 Rpusd4 RNA pseudouridylate synthase domain containing 4 -7.0059 0.0000
50849 ENSMUSG00000032890 Rims3 regulating synaptic membrane exocytosis 3 -7.0030 0.0000
50848 ENSMUSG00000038462 Uqcrfs1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 -7.0014 0.0000
50847 ENSMUSG00000022008 Gpalpp1 GPALPP motifs containing 1 -7.0002 0.0000
50846 ENSMUSG00000024544 Ldlrad4 low density lipoprotein receptor class A domain containing 4 -7.0000 0.0000
50845 ENSMUSG00000034751 Mast4 microtubule associated serine/threonine kinase family member 4 -7.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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