Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147599


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M16Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 9.7797 0.0000
2 ENSMUSG00000029179 Zcchc4 zinc finger, CCHC domain containing 4 9.1284 0.0000
3 ENSMUSG00000067750 Khdc1a KH domain containing 1A 8.9773 0.0000
4 ENSMUSG00000086194 Gm16329 predicted gene 16329 8.9773 0.0000
5 ENSMUSG00000110372 Gm8096 predicted gene 8096 8.8880 0.0000
6 ENSMUSG00000109657 1700008N11Rik RIKEN cDNA 1700008N11 gene 8.8424 0.0000
7 ENSMUSG00000078439 Smim24 small integral membrane protein 24 8.6245 0.0000
8 ENSMUSG00000078440 Dohh deoxyhypusine hydroxylase/monooxygenase 8.6245 0.0000
9 ENSMUSG00000098811 Mir6913 microRNA 6913 8.6245 0.0000
10 ENSMUSG00000074570 Cass4 Cas scaffolding protein family member 4 8.5812 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000021756 Il6st interleukin 6 signal transducer -4.6080 0.0000
47080 ENSMUSG00000066892 Fbxl12 F-box and leucine-rich repeat protein 12 -4.6072 0.0000
47078 ENSMUSG00000090877 Hspa1b heat shock protein 1B -4.6070 0.0000
47077 ENSMUSG00000030763 Lcmt1 leucine carboxyl methyltransferase 1 -4.6070 0.0000
47076 ENSMUSG00000104569 Gm43054 predicted gene 43054 -4.6019 0.0000
47075 ENSMUSG00000086322 E130218I03Rik RIKEN cDNA E130218I03 gene -4.6010 0.0006
47074 ENSMUSG00000016087 Fli1 Friend leukemia integration 1 -4.5986 0.0000
47073 ENSMUSG00000032712 Resf1 retroelement silencing factor 1 -4.5983 0.0000
47072 ENSMUSG00000021820 Camk2g calcium/calmodulin-dependent protein kinase II gamma -4.5979 0.0000
10 ENSMUSG00000074570 Cass4 Cas scaffolding protein family member 4 8.5812 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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