SHOGoiN Cell Methylome: GSM1147599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147599


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5090101000001000000000-236Sequence Read ArchiveSRP023116SRP023116_M16Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeSpermMouseGenitaliaBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000090095 Rpl29-ps1 ribosomal protein L29, pseudogene 1 9.7797 0.0000
2 ENSMUSG00000029179 Zcchc4 zinc finger, CCHC domain containing 4 9.1284 0.0000
3 ENSMUSG00000067750 Khdc1a KH domain containing 1A 8.9773 0.0000
4 ENSMUSG00000086194 Gm16329 predicted gene 16329 8.9773 0.0000
5 ENSMUSG00000110372 Gm8096 predicted gene 8096 8.8880 0.0000
6 ENSMUSG00000109657 1700008N11Rik RIKEN cDNA 1700008N11 gene 8.8424 0.0000
7 ENSMUSG00000078439 Smim24 small integral membrane protein 24 8.6245 0.0000
8 ENSMUSG00000078440 Dohh deoxyhypusine hydroxylase/monooxygenase 8.6245 0.0000
9 ENSMUSG00000098811 Mir6913 microRNA 6913 8.6245 0.0000
10 ENSMUSG00000074570 Cass4 Cas scaffolding protein family member 4 8.5812 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000041674 BC006965 cDNA sequence BC006965 -8.2785 0.0000
50853 ENSMUSG00000055717 Slain1 SLAIN motif family, member 1 -8.2718 0.0000
50852 ENSMUSG00000034210 Efcab14 EF-hand calcium binding domain 14 -8.2674 0.0000
50851 ENSMUSG00000098710 Mir7067 microRNA 7067 -8.2665 0.0000
50850 ENSMUSG00000077563 Snora68 small nucleolar RNA, H/ACA box 68 -8.2665 0.0000
50849 ENSMUSG00000000792 Slc5a5 solute carrier family 5 (sodium iodide symporter), member 5 -8.2665 0.0000
50848 ENSMUSG00000084739 Gm22067 predicted gene, 22067 -8.2527 0.0000
50847 ENSMUSG00000082954 Gm15504 predicted gene 15504 -8.2472 0.0000
50846 ENSMUSG00000050973 Gdpgp1 GDP-D-glucose phosphorylase 1 -8.2472 0.0000
50845 ENSMUSG00000030538 Cib1 calcium and integrin binding 1 (calmyrin) -8.2472 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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