Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147601
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147601
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M18
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Male pronucleus (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000110525
Gm45893
predicted gene 45893
7.9715
0.0000
2
ENSMUSG00000064763
Gm23515
predicted gene, 23515
7.4346
0.0000
3
ENSMUSG00000017737
Mmp9
matrix metallopeptidase 9
7.0187
0.0000
4
ENSMUSG00000088924
Gm24298
predicted gene, 24298
6.9658
0.0000
5
ENSMUSG00000025515
Muc2
mucin 2
6.9307
0.0000
6
ENSMUSG00000006529
Itih1
inter-alpha trypsin inhibitor, heavy chain 1
6.9189
0.0000
7
ENSMUSG00000021918
Nek4
NIMA (never in mitosis gene a)-related expressed kinase 4
6.9189
0.0000
9
ENSMUSG00000110117
Gm17990
predicted gene, 17990
6.7096
0.0000
10
ENSMUSG00000100827
Gm29069
predicted gene 29069
6.7004
0.0000
47072
ENSMUSG00000039218
Srrm2
serine/arginine repetitive matrix 2
-3.5135
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000073406
H2-Bl
histocompatibility 2, blastocyst
-3.5192
0.1123
47080
ENSMUSG00000022437
Samm50
SAMM50 sorting and assembly machinery component
-3.5192
0.0111
47079
ENSMUSG00000018845
Unc45b
unc-45 myosin chaperone B
-3.5186
0.0000
47078
ENSMUSG00000101451
Gm29430
predicted gene 29430
-3.5172
0.0000
47077
ENSMUSG00000056468
5730596B20Rik
RIKEN cDNA 5730596B20 gene
-3.5172
0.0000
47076
ENSMUSG00000027239
Mdk
midkine
-3.5170
0.0000
47075
ENSMUSG00000037624
Kcnk2
potassium channel, subfamily K, member 2
-3.5155
0.0008
47074
ENSMUSG00000054099
Slc25a40
solute carrier family 25, member 40
-3.5136
0.0273
47073
ENSMUSG00000031523
Dlc1
deleted in liver cancer 1
-3.5135
0.0000
47072
ENSMUSG00000039218
Srrm2
serine/arginine repetitive matrix 2
-3.5135
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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