SHOGoiN Cell Methylome: GSM1147601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147601


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M18Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000110525 Gm45893 predicted gene 45893 7.9715 0.0000
2 ENSMUSG00000064763 Gm23515 predicted gene, 23515 7.4346 0.0000
3 ENSMUSG00000017737 Mmp9 matrix metallopeptidase 9 7.0187 0.0000
4 ENSMUSG00000088924 Gm24298 predicted gene, 24298 6.9658 0.0000
5 ENSMUSG00000025515 Muc2 mucin 2 6.9307 0.0000
6 ENSMUSG00000006529 Itih1 inter-alpha trypsin inhibitor, heavy chain 1 6.9189 0.0000
7 ENSMUSG00000021918 Nek4 NIMA (never in mitosis gene a)-related expressed kinase 4 6.9189 0.0000
8 ENSMUSG00000099193 Gm27374 predicted gene, 27374 6.9189 0.0000
9 ENSMUSG00000110117 Gm17990 predicted gene, 17990 6.7096 0.0000
10 ENSMUSG00000100827 Gm29069 predicted gene 29069 6.7004 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000037405 Icam1 intercellular adhesion molecule 1 -6.1015 0.0000
50853 ENSMUSG00000020354 Sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) -6.0862 0.0000
50852 ENSMUSG00000107340 Gm42789 predicted gene 42789 -6.0855 0.0000
50851 ENSMUSG00000002486 Tchp trichoplein, keratin filament binding -6.0855 0.0000
50850 ENSMUSG00000026155 Smap1 small ArfGAP 1 -6.0851 0.0000
50849 ENSMUSG00000017491 Rarb retinoic acid receptor, beta -6.0767 0.0000
50848 ENSMUSG00000085034 Gm11240 predicted gene 11240 -6.0762 0.0000
50847 ENSMUSG00000019774 Mtrf1l mitochondrial translational release factor 1-like -6.0750 0.0000
50846 ENSMUSG00000003062 Stard3nl STARD3 N-terminal like -6.0744 0.0000
50845 ENSMUSG00000020255 D10Wsu102e DNA segment, Chr 10, Wayne State University 102, expressed -6.0740 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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