SHOGoiN Cell Methylome: GSM1147601
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147601 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP023116 | SRP023116_M18 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Male pronucleus (Zygote) | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000110525 | Gm45893 | predicted gene 45893 | 7.9715 | 0.0000 |
| 2 | ENSMUSG00000064763 | Gm23515 | predicted gene, 23515 | 7.4346 | 0.0000 |
| 3 | ENSMUSG00000017737 | Mmp9 | matrix metallopeptidase 9 | 7.0187 | 0.0000 |
| 4 | ENSMUSG00000088924 | Gm24298 | predicted gene, 24298 | 6.9658 | 0.0000 |
| 5 | ENSMUSG00000025515 | Muc2 | mucin 2 | 6.9307 | 0.0000 |
| 6 | ENSMUSG00000006529 | Itih1 | inter-alpha trypsin inhibitor, heavy chain 1 | 6.9189 | 0.0000 |
| 7 | ENSMUSG00000021918 | Nek4 | NIMA (never in mitosis gene a)-related expressed kinase 4 | 6.9189 | 0.0000 |
| 8 | ENSMUSG00000099193 | Gm27374 | predicted gene, 27374 | 6.9189 | 0.0000 |
| 9 | ENSMUSG00000110117 | Gm17990 | predicted gene, 17990 | 6.7096 | 0.0000 |
| 10 | ENSMUSG00000100827 | Gm29069 | predicted gene 29069 | 6.7004 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000037405 | Icam1 | intercellular adhesion molecule 1 | -6.1015 | 0.0000 |
| 50853 | ENSMUSG00000020354 | Sgcd | sarcoglycan, delta (dystrophin-associated glycoprotein) | -6.0862 | 0.0000 |
| 50852 | ENSMUSG00000107340 | Gm42789 | predicted gene 42789 | -6.0855 | 0.0000 |
| 50851 | ENSMUSG00000002486 | Tchp | trichoplein, keratin filament binding | -6.0855 | 0.0000 |
| 50850 | ENSMUSG00000026155 | Smap1 | small ArfGAP 1 | -6.0851 | 0.0000 |
| 50849 | ENSMUSG00000017491 | Rarb | retinoic acid receptor, beta | -6.0767 | 0.0000 |
| 50848 | ENSMUSG00000085034 | Gm11240 | predicted gene 11240 | -6.0762 | 0.0000 |
| 50847 | ENSMUSG00000019774 | Mtrf1l | mitochondrial translational release factor 1-like | -6.0750 | 0.0000 |
| 50846 | ENSMUSG00000003062 | Stard3nl | STARD3 N-terminal like | -6.0744 | 0.0000 |
| 50845 | ENSMUSG00000020255 | D10Wsu102e | DNA segment, Chr 10, Wayne State University 102, expressed | -6.0740 | 0.0000 |
