Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147601

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147601 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP023116	SRP023116_M18	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Male pronucleus (Zygote)	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000110525	Gm45893	predicted gene 45893	7.9715	0.0000
2	ENSMUSG00000064763	Gm23515	predicted gene, 23515	7.4346	0.0000
3	ENSMUSG00000017737	Mmp9	matrix metallopeptidase 9	7.0187	0.0000
4	ENSMUSG00000088924	Gm24298	predicted gene, 24298	6.9658	0.0000
5	ENSMUSG00000025515	Muc2	mucin 2	6.9307	0.0000
6	ENSMUSG00000006529	Itih1	inter-alpha trypsin inhibitor, heavy chain 1	6.9189	0.0000
7	ENSMUSG00000021918	Nek4	NIMA (never in mitosis gene a)-related expressed kinase 4	6.9189	0.0000
9	ENSMUSG00000110117	Gm17990	predicted gene, 17990	6.7096	0.0000
10	ENSMUSG00000100827	Gm29069	predicted gene 29069	6.7004	0.0000
47072	ENSMUSG00000039218	Srrm2	serine/arginine repetitive matrix 2	-3.5135	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000073406	H2-Bl	histocompatibility 2, blastocyst	-3.5192	0.1123
47080	ENSMUSG00000022437	Samm50	SAMM50 sorting and assembly machinery component	-3.5192	0.0111
47079	ENSMUSG00000018845	Unc45b	unc-45 myosin chaperone B	-3.5186	0.0000
47078	ENSMUSG00000101451	Gm29430	predicted gene 29430	-3.5172	0.0000
47077	ENSMUSG00000056468	5730596B20Rik	RIKEN cDNA 5730596B20 gene	-3.5172	0.0000
47076	ENSMUSG00000027239	Mdk	midkine	-3.5170	0.0000
47075	ENSMUSG00000037624	Kcnk2	potassium channel, subfamily K, member 2	-3.5155	0.0008
47074	ENSMUSG00000054099	Slc25a40	solute carrier family 25, member 40	-3.5136	0.0273
47073	ENSMUSG00000031523	Dlc1	deleted in liver cancer 1	-3.5135	0.0000
47072	ENSMUSG00000039218	Srrm2	serine/arginine repetitive matrix 2	-3.5135	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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