Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147601


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M18Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000110525 Gm45893 predicted gene 45893 7.9715 0.0000
2 ENSMUSG00000064763 Gm23515 predicted gene, 23515 7.4346 0.0000
3 ENSMUSG00000017737 Mmp9 matrix metallopeptidase 9 7.0187 0.0000
4 ENSMUSG00000088924 Gm24298 predicted gene, 24298 6.9658 0.0000
5 ENSMUSG00000025515 Muc2 mucin 2 6.9307 0.0000
6 ENSMUSG00000006529 Itih1 inter-alpha trypsin inhibitor, heavy chain 1 6.9189 0.0000
7 ENSMUSG00000021918 Nek4 NIMA (never in mitosis gene a)-related expressed kinase 4 6.9189 0.0000
9 ENSMUSG00000110117 Gm17990 predicted gene, 17990 6.7096 0.0000
10 ENSMUSG00000100827 Gm29069 predicted gene 29069 6.7004 0.0000
47072 ENSMUSG00000039218 Srrm2 serine/arginine repetitive matrix 2 -3.5135 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000073406 H2-Bl histocompatibility 2, blastocyst -3.5192 0.1123
47080 ENSMUSG00000022437 Samm50 SAMM50 sorting and assembly machinery component -3.5192 0.0111
47079 ENSMUSG00000018845 Unc45b unc-45 myosin chaperone B -3.5186 0.0000
47078 ENSMUSG00000101451 Gm29430 predicted gene 29430 -3.5172 0.0000
47077 ENSMUSG00000056468 5730596B20Rik RIKEN cDNA 5730596B20 gene -3.5172 0.0000
47076 ENSMUSG00000027239 Mdk midkine -3.5170 0.0000
47075 ENSMUSG00000037624 Kcnk2 potassium channel, subfamily K, member 2 -3.5155 0.0008
47074 ENSMUSG00000054099 Slc25a40 solute carrier family 25, member 40 -3.5136 0.0273
47073 ENSMUSG00000031523 Dlc1 deleted in liver cancer 1 -3.5135 0.0000
47072 ENSMUSG00000039218 Srrm2 serine/arginine repetitive matrix 2 -3.5135 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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