SHOGoiN Cell Methylome: GSM1147602
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147602 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP023116 | SRP023116_M19 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Female pronucleus (Zygote) | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000098281 | Gm27529 | predicted gene, 27529 | 10.3725 | 0.0000 |
| 2 | ENSMUSG00000098276 | Mir6358 | microRNA 6358 | 9.2372 | 0.0000 |
| 3 | ENSMUSG00000098284 | A330093E20Rik | RIKEN cDNA A330093E20 gene | 9.1997 | 0.0000 |
| 4 | ENSMUSG00000047369 | Dnah14 | NA | 9.0112 | 0.0000 |
| 5 | ENSMUSG00000090658 | Prss47 | NA | 8.9099 | 0.0000 |
| 6 | ENSMUSG00000066771 | Gm5614 | predicted gene 5614 | 8.9089 | 0.0000 |
| 7 | ENSMUSG00000076128 | Mir686 | microRNA 686 | 8.7842 | 0.0000 |
| 8 | ENSMUSG00000109218 | Gm44872 | predicted gene 44872 | 8.7020 | 0.0000 |
| 9 | ENSMUSG00000049728 | Zfp668 | zinc finger protein 668 | 8.6841 | 0.0000 |
| 10 | ENSMUSG00000049739 | Zfp646 | zinc finger protein 646 | 8.6841 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000002006 | Pdzd4 | PDZ domain-containing protein 4 | -8.3027 | 0.0000 |
| 50997 | ENSMUSG00000110091 | Gm39115 | predicted, 39115 | -8.2992 | 0.0000 |
| 50996 | ENSMUSG00000021760 | Gpx8 | Probable glutathione peroxidase 8 | -8.2977 | 0.0000 |
| 50995 | ENSMUSG00000069041 | Slc25a31 | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 | -8.2946 | 0.0000 |
| 50994 | ENSMUSG00000040632 | Nrl | Neural retina-specific leucine zipper protein | -8.2904 | 0.0000 |
| 50993 | ENSMUSG00000028982 | Slc25a33 | Solute carrier family 25 member 33 | -8.2761 | 0.0000 |
| 50992 | ENSMUSG00000111809 | NA | -8.2724 | 0.0000 | |
| 50991 | ENSMUSG00000106418 | Gm44397 | predicted gene, 44397 | -8.2710 | 0.0000 |
| 50990 | ENSMUSG00000099088 | Gm27920 | predicted gene, 27920 | -8.2681 | 0.0000 |
| 50989 | ENSMUSG00000027498 | Cstf1 | Cleavage stimulation factor subunit 1 | -8.2680 | 0.0000 |
