Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147602

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147602 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP023116	SRP023116_M19	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Female pronucleus (Zygote)	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
2	ENSMUSG00000098276	Mir6358	microRNA 6358	9.2372	0.0000
3	ENSMUSG00000098284	A330093E20Rik	RIKEN cDNA A330093E20 gene	9.1997	0.0000
4	ENSMUSG00000047369	Dnah14	dynein, axonemal, heavy chain 14	9.0112	0.0000
5	ENSMUSG00000090658	Prss47	protease, serine 47	8.9099	0.0000
6	ENSMUSG00000066771	Gm5614	predicted gene 5614	8.9089	0.0000
7	ENSMUSG00000076128	Mir686	microRNA 686	8.7842	0.0000
8	ENSMUSG00000109218	Gm44872	predicted gene 44872	8.7020	0.0000
9	ENSMUSG00000049728	Zfp668	zinc finger protein 668	8.6841	0.0000
10	ENSMUSG00000049739	Zfp646	zinc finger protein 646	8.6841	0.0000
47072	ENSMUSG00000112411	Gm19337	predicted gene, 19337	-4.8267	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000035829	Ppp1r26	protein phosphatase 1, regulatory subunit 26	-4.8324	0.0000
47080	ENSMUSG00000025154	Arhgap19	Rho GTPase activating protein 19	-4.8322	0.0000
47079	ENSMUSG00000022769	Sdf2l1	stromal cell-derived factor 2-like 1	-4.8312	0.0000
47078	ENSMUSG00000085749	Gm12843	predicted gene 12843	-4.8295	0.0000
47077	ENSMUSG00000032217	Rnf111	ring finger 111	-4.8283	0.0000
47076	ENSMUSG00000110802	Gm47141	predicted gene, 47141	-4.8276	0.0000
47075	ENSMUSG00000080364	Gm25777	predicted gene, 25777	-4.8276	0.0000
47074	ENSMUSG00000082507	Gm9378	predicted gene 9378	-4.8269	0.0000
47073	ENSMUSG00000038702	Dsel	dermatan sulfate epimerase-like	-4.8267	0.0000
47072	ENSMUSG00000112411	Gm19337	predicted gene, 19337	-4.8267	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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