Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM1147602
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147602
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M19
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Female pronucleus (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
2
ENSMUSG00000098276
Mir6358
microRNA 6358
9.2372
0.0000
3
ENSMUSG00000098284
A330093E20Rik
RIKEN cDNA A330093E20 gene
9.1997
0.0000
4
ENSMUSG00000047369
Dnah14
dynein, axonemal, heavy chain 14
9.0112
0.0000
5
ENSMUSG00000090658
Prss47
protease, serine 47
8.9099
0.0000
6
ENSMUSG00000066771
Gm5614
predicted gene 5614
8.9089
0.0000
7
ENSMUSG00000076128
Mir686
microRNA 686
8.7842
0.0000
8
ENSMUSG00000109218
Gm44872
predicted gene 44872
8.7020
0.0000
9
ENSMUSG00000049728
Zfp668
zinc finger protein 668
8.6841
0.0000
10
ENSMUSG00000049739
Zfp646
zinc finger protein 646
8.6841
0.0000
47072
ENSMUSG00000112411
Gm19337
predicted gene, 19337
-4.8267
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000035829
Ppp1r26
protein phosphatase 1, regulatory subunit 26
-4.8324
0.0000
47080
ENSMUSG00000025154
Arhgap19
Rho GTPase activating protein 19
-4.8322
0.0000
47079
ENSMUSG00000022769
Sdf2l1
stromal cell-derived factor 2-like 1
-4.8312
0.0000
47078
ENSMUSG00000085749
Gm12843
predicted gene 12843
-4.8295
0.0000
47077
ENSMUSG00000032217
Rnf111
ring finger 111
-4.8283
0.0000
47076
ENSMUSG00000110802
Gm47141
predicted gene, 47141
-4.8276
0.0000
47075
ENSMUSG00000080364
Gm25777
predicted gene, 25777
-4.8276
0.0000
47074
ENSMUSG00000082507
Gm9378
predicted gene 9378
-4.8269
0.0000
47073
ENSMUSG00000038702
Dsel
dermatan sulfate epimerase-like
-4.8267
0.0000
47072
ENSMUSG00000112411
Gm19337
predicted gene, 19337
-4.8267
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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