Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147602


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M19Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000098276 Mir6358 microRNA 6358 9.2372 0.0000
3 ENSMUSG00000098284 A330093E20Rik RIKEN cDNA A330093E20 gene 9.1997 0.0000
4 ENSMUSG00000047369 Dnah14 dynein, axonemal, heavy chain 14 9.0112 0.0000
5 ENSMUSG00000090658 Prss47 protease, serine 47 8.9099 0.0000
6 ENSMUSG00000066771 Gm5614 predicted gene 5614 8.9089 0.0000
7 ENSMUSG00000076128 Mir686 microRNA 686 8.7842 0.0000
8 ENSMUSG00000109218 Gm44872 predicted gene 44872 8.7020 0.0000
9 ENSMUSG00000049728 Zfp668 zinc finger protein 668 8.6841 0.0000
10 ENSMUSG00000049739 Zfp646 zinc finger protein 646 8.6841 0.0000
47072 ENSMUSG00000112411 Gm19337 predicted gene, 19337 -4.8267 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000035829 Ppp1r26 protein phosphatase 1, regulatory subunit 26 -4.8324 0.0000
47080 ENSMUSG00000025154 Arhgap19 Rho GTPase activating protein 19 -4.8322 0.0000
47079 ENSMUSG00000022769 Sdf2l1 stromal cell-derived factor 2-like 1 -4.8312 0.0000
47078 ENSMUSG00000085749 Gm12843 predicted gene 12843 -4.8295 0.0000
47077 ENSMUSG00000032217 Rnf111 ring finger 111 -4.8283 0.0000
47076 ENSMUSG00000110802 Gm47141 predicted gene, 47141 -4.8276 0.0000
47075 ENSMUSG00000080364 Gm25777 predicted gene, 25777 -4.8276 0.0000
47074 ENSMUSG00000082507 Gm9378 predicted gene 9378 -4.8269 0.0000
47073 ENSMUSG00000038702 Dsel dermatan sulfate epimerase-like -4.8267 0.0000
47072 ENSMUSG00000112411 Gm19337 predicted gene, 19337 -4.8267 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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