Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
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SHOGoiN Cell Methylome: GSM1147603
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147603
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M20
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Male pronucleus (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000104610
Gm567
predicted gene 567
5.4460
0.0000
2
ENSMUSG00000025461
Scart1
scavenger receptor family member expressed on T cells 1
5.1699
0.0000
3
ENSMUSG00000045318
Adra2c
adrenergic receptor, alpha 2c
5.1699
0.0000
4
ENSMUSG00000028093
Acp6
acid phosphatase 6, lysophosphatidic
5.1153
0.0000
5
ENSMUSG00000091336
Gm17157
predicted gene 17157
5.0530
0.0000
6
ENSMUSG00000001120
Pcbp3
poly(rC) binding protein 3
5.0444
0.0000
7
ENSMUSG00000103930
Gm36961
predicted gene, 36961
5.0444
0.0000
8
ENSMUSG00000036040
Adamtsl2
ADAMTS-like 2
5.0000
0.0000
9
ENSMUSG00000098881
Mir6927
microRNA 6927
5.0000
0.0000
10
ENSMUSG00000033294
Noc4l
NOC4 like
4.9542
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000020653
Klf11
Kruppel-like factor 11
-2.7635
0.0000
47080
ENSMUSG00000099071
Mir8095
microRNA 8095
-2.7629
0.2656
47079
ENSMUSG00000086877
A230072C01Rik
RIKEN cDNA A230072C01 gene
-2.7629
0.2656
47078
ENSMUSG00000026782
Abi2
abl interactor 2
-2.7626
0.0000
47077
ENSMUSG00000002222
Rmnd5a
required for meiotic nuclear division 5 homolog A
-2.7618
0.0000
47076
ENSMUSG00000045193
Cirbp
cold inducible RNA binding protein
-2.7613
0.0118
47075
ENSMUSG00000046417
Lrrc75a
leucine rich repeat containing 75A
-2.7612
0.0000
47074
ENSMUSG00000029711
Epo
erythropoietin
-2.7610
0.0002
47073
ENSMUSG00000107859
Gm30731
predicted gene, 30731
-2.7604
0.0004
47072
ENSMUSG00000061613
U2af1
U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
-2.7593
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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