SHOGoiN Cell Methylome: GSM1147603
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147603 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP023116 | SRP023116_M20 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Male pronucleus (Zygote) | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000104610 | Gm567 | predicted gene 567 | 5.4460 | 0.0000 |
| 2 | ENSMUSG00000025461 | Cd163l1 | CD163 molecule-like 1 | 5.1699 | 0.0000 |
| 3 | ENSMUSG00000045318 | Adra2c | Alpha-2C adrenergic receptor | 5.1699 | 0.0000 |
| 4 | ENSMUSG00000028093 | Acp6 | Lysophosphatidic acid phosphatase type 6 | 5.1153 | 0.0000 |
| 5 | ENSMUSG00000091336 | Gm17157 | predicted gene 17157 | 5.0530 | 0.0000 |
| 6 | ENSMUSG00000001120 | Pcbp3 | Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA. | 5.0444 | 0.0000 |
| 7 | ENSMUSG00000103930 | Gm36961 | predicted gene, 36961 | 5.0444 | 0.0000 |
| 8 | ENSMUSG00000036040 | Adamtsl2 | ADAMTS-like protein 2 | 5.0000 | 0.0000 |
| 9 | ENSMUSG00000098881 | Mir6927 | microRNA 6927 | 5.0000 | 0.0000 |
| 10 | ENSMUSG00000033294 | Noc4l | Nucleolar complex | 4.9542 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50998 | ENSMUSG00000054843 | Atrnl1 | Attractin-like protein 1 | -5.3645 | 0.0000 |
| 50997 | ENSMUSG00000003581 | Rnf215 | RING finger protein 215 | -5.3587 | 0.0000 |
| 50996 | ENSMUSG00000051067 | Lingo3 | Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3 | -5.3576 | 0.0000 |
| 50995 | ENSMUSG00000049641 | Vgll2 | vestigial like family member 2 | -5.3576 | 0.0000 |
| 50994 | ENSMUSG00000041238 | Rbbp8 | retinoblastoma binding protein 8, endonuclease | -5.3418 | 0.0000 |
| 50993 | ENSMUSG00000020415 | Pttg1 | Securin | -5.3232 | 0.0000 |
| 50992 | ENSMUSG00000018217 | Pmp22 | peripheral myelin protein 22 isoform 2 | -5.3219 | 0.0000 |
| 50991 | ENSMUSG00000102766 | Gm6420 | NA | -5.3079 | 0.0000 |
| 50990 | ENSMUSG00000033799 | Fam208b | Protein FAM208B | -5.2984 | 0.0000 |
| 50989 | ENSMUSG00000111301 | Gm30671 | predicted gene, 30671 | -5.2974 | 0.0000 |
