SHOGoiN Cell Methylome: GSM1147603
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147603 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP023116 | SRP023116_M20 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Male pronucleus (Zygote) | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000104610 | Gm567 | predicted gene 567 | 5.4460 | 0.0000 |
| 2 | ENSMUSG00000025461 | Cd163l1 | CD163 molecule-like 1 | 5.1699 | 0.0000 |
| 3 | ENSMUSG00000045318 | Adra2c | adrenergic receptor, alpha 2c | 5.1699 | 0.0000 |
| 4 | ENSMUSG00000028093 | Acp6 | acid phosphatase 6, lysophosphatidic | 5.1153 | 0.0000 |
| 5 | ENSMUSG00000091336 | Gm17157 | predicted gene 17157 | 5.0530 | 0.0000 |
| 6 | ENSMUSG00000001120 | Pcbp3 | poly(rC) binding protein 3 | 5.0444 | 0.0000 |
| 7 | ENSMUSG00000103930 | Gm36961 | predicted gene, 36961 | 5.0444 | 0.0000 |
| 8 | ENSMUSG00000036040 | Adamtsl2 | ADAMTS-like 2 | 5.0000 | 0.0000 |
| 9 | ENSMUSG00000098881 | Mir6927 | microRNA 6927 | 5.0000 | 0.0000 |
| 10 | ENSMUSG00000033294 | Noc4l | NOC4 like | 4.9542 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000030189 | Ybx3 | Y box protein 3 | -4.9939 | 0.0000 |
| 50853 | ENSMUSG00000100747 | 1700084E18Rik | RIKEN cDNA 1700084E18 gene | -4.9932 | 0.0000 |
| 50852 | ENSMUSG00000099041 | Gm28035 | predicted gene, 28035 | -4.9932 | 0.0000 |
| 50851 | ENSMUSG00000051224 | Tceanc | transcription elongation factor A (SII) N-terminal and central domain containing | -4.9924 | 0.0000 |
| 50850 | ENSMUSG00000038497 | Tmco3 | transmembrane and coiled-coil domains 3 | -4.9924 | 0.0000 |
| 50849 | ENSMUSG00000016664 | Pacsin2 | protein kinase C and casein kinase substrate in neurons 2 | -4.9858 | 0.0000 |
| 50848 | ENSMUSG00000020074 | Ccar1 | cell division cycle and apoptosis regulator 1 | -4.9841 | 0.0000 |
| 50847 | ENSMUSG00000074922 | Fam122a | family with sequence similarity 122, member A | -4.9835 | 0.0000 |
| 50846 | ENSMUSG00000030107 | Usp18 | ubiquitin specific peptidase 18 | -4.9815 | 0.0000 |
| 50845 | ENSMUSG00000093080 | Mir3060 | microRNA 3060 | -4.9777 | 0.0000 |
