SHOGoiN Cell Methylome: GSM1147604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147604


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M21Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000097152 Gm26515 predicted gene, 26515 6.7279 0.0000
2 ENSMUSG00000110111 Gm7786 predicted gene 7786 6.7279 0.0000
3 ENSMUSG00000023274 Cd4 CD4 antigen 6.6380 0.0000
4 ENSMUSG00000110170 St6galnac2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 6.2479 0.0000
5 ENSMUSG00000084191 Gm15167 predicted gene 15167 6.1699 0.0000
6 ENSMUSG00000093409 Gm25193 predicted gene, 25193 6.1293 0.0000
7 ENSMUSG00000097731 2700016F22Rik RIKEN cDNA 2700016F22 gene 6.0661 0.0000
8 ENSMUSG00000102928 Ighv1-46 immunoglobulin heavy variable V1-46 6.0661 0.0000
9 ENSMUSG00000037627 Rgs22 regulator of G-protein signalling 22 6.0444 0.0000
10 ENSMUSG00000054446 Cpa1 carboxypeptidase A1, pancreatic 6.0444 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000101493 2810405F17Rik RIKEN cDNA 2810405F17 gene -5.5806 0.0000
50853 ENSMUSG00000070667 Rpl31-ps10 ribosomal protein L31, pseudogene 10 -5.5806 0.0000
50852 ENSMUSG00000017679 Ttpal tocopherol (alpha) transfer protein-like -5.5785 0.0000
50851 ENSMUSG00000015355 Cd48 CD48 antigen -5.5770 0.0000
50850 ENSMUSG00000097406 Gm26833 predicted gene, 26833 -5.5734 0.0000
50849 ENSMUSG00000104069 Gm37198 predicted gene, 37198 -5.5719 0.0000
50848 ENSMUSG00000085965 2310016D23Rik RIKEN cDNA 2310016D23 gene -5.5719 0.0000
50847 ENSMUSG00000102741 Gm2979 predicted gene 2979 -5.5686 0.0000
50846 ENSMUSG00000037652 Phc3 polyhomeotic 3 -5.5686 0.0000
50845 ENSMUSG00000058669 Nkx2-9 NK2 homeobox 9 -5.5676 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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