Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147604


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M21Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSMUSG00000110111 Gm7786 predicted gene 7786 6.7279 0.0000
3 ENSMUSG00000023274 Cd4 CD4 antigen 6.6380 0.0000
4 ENSMUSG00000110170 St6galnac2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 6.2479 0.0000
5 ENSMUSG00000084191 Gm15167 predicted gene 15167 6.1699 0.0000
8 ENSMUSG00000102928 Ighv1-46 immunoglobulin heavy variable V1-46 6.0661 0.0000
9 ENSMUSG00000037627 Rgs22 regulator of G-protein signalling 22 6.0444 0.0000
10 ENSMUSG00000054446 Cpa1 carboxypeptidase A1, pancreatic 6.0444 0.0000
47072 ENSMUSG00000033871 Ppargc1b peroxisome proliferative activated receptor, gamma, coactivator 1 beta -3.1700 0.0000
47073 ENSMUSG00000031557 Plekha2 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2 -3.1705 0.0000
47074 ENSMUSG00000038722 Bud31 BUD31 homolog -3.1709 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000043013 Onecut1 one cut domain, family member 1 -3.1738 0.0000
47080 ENSMUSG00000030214 Plbd1 phospholipase B domain containing 1 -3.1727 0.0000
47079 ENSMUSG00000034329 Brip1 BRCA1 interacting protein C-terminal helicase 1 -3.1725 0.0008
47078 ENSMUSG00000038280 Ostm1 osteopetrosis associated transmembrane protein 1 -3.1723 0.0000
47077 ENSMUSG00000019803 Nr2e1 nuclear receptor subfamily 2, group E, member 1 -3.1723 0.0000
47076 ENSMUSG00000026500 Cox20 cytochrome c oxidase assembly protein 20 -3.1718 0.0000
47075 ENSMUSG00000061143 Maml3 mastermind like transcriptional coactivator 3 -3.1717 0.0000
47074 ENSMUSG00000038722 Bud31 BUD31 homolog -3.1709 0.0007
47073 ENSMUSG00000031557 Plekha2 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2 -3.1705 0.0000
47072 ENSMUSG00000033871 Ppargc1b peroxisome proliferative activated receptor, gamma, coactivator 1 beta -3.1700 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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