Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM1147605
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147605
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M22
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Male pronucleus (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000087823
Gm22281
predicted gene, 22281
6.9542
0.0000
2
ENSMUSG00000107728
Gm38910
predicted gene, 38910
6.7279
0.0000
3
ENSMUSG00000109602
Gm31597
predicted gene, 31597
6.6147
0.0000
4
ENSMUSG00000105087
Gm42552
predicted gene 42552
6.5660
0.0000
5
ENSMUSG00000089709
Gm16262
predicted gene 16262
6.4919
0.0000
6
ENSMUSG00000111575
Gm47926
predicted gene, 47926
6.4429
0.0000
7
ENSMUSG00000081605
Gm15953
predicted gene 15953
6.4263
0.0000
8
ENSMUSG00000103435
Gm36992
predicted gene, 36992
6.3038
0.0000
9
ENSMUSG00000104154
Gm38104
predicted gene, 38104
6.3038
0.0000
10
ENSMUSG00000009487
Otog
otogelin
6.0224
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000065606
Mir16-2
microRNA 16-2
-2.1073
0.1158
47080
ENSMUSG00000065580
Mir15b
microRNA 15b
-2.1073
0.1158
47079
ENSMUSG00000028945
Rheb
Ras homolog enriched in brain
-2.1062
0.0000
47078
ENSMUSG00000042680
Garem1
GRB2 associated regulator of MAPK1 subtype 1
-2.1061
0.1346
47077
ENSMUSG00000009927
Rps25
ribosomal protein S25
-2.1052
0.0521
47075
ENSMUSG00000002033
Cd3g
CD3 antigen, gamma polypeptide
-2.1050
0.4447
47074
ENSMUSG00000108695
Siglecl1
Siglec family like 1
-2.1047
0.0236
47072
ENSMUSG00000000568
Hnrnpd
heterogeneous nuclear ribonucleoprotein D
-2.1045
0.0775
10
ENSMUSG00000009487
Otog
otogelin
6.0224
0.0000
9
ENSMUSG00000104154
Gm38104
predicted gene, 38104
6.3038
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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