Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147606

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1147606 Profile download	7010000000000000000000-769	Sequence Read Archive	SRP023116	SRP023116_M23	Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing	Methylome	Female pronucleus (Zygote)	Mouse	Early embryonic tissue	Bisulfite-Seq (RRBS)	HiSeq 2000	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSMUSG00000022683	Pla2g10	phospholipase A2, group X	7.4512	0.0000
2	ENSMUSG00000086550	Pla2g10os	phospholipase A2, group X, opposite strand	7.4512	0.0000
3	ENSMUSG00000088236	Gm25425	predicted gene, 25425	7.2288	0.0000
4	ENSMUSG00000024220	Zfp523	zinc finger protein 523	7.2185	0.0000
5	ENSMUSG00000044312	Neurog3	neurogenin 3	7.2082	0.0000
6	ENSMUSG00000082341	Gm14143	predicted gene 14143	7.1799	0.0000
7	ENSMUSG00000029608	Rph3a	rabphilin 3A	6.9396	0.0000
8	ENSMUSG00000025221	Kcnip2	Kv channel-interacting protein 2	6.9069	0.0000
9	ENSMUSG00000057945	Gm17136	predicted gene 17136	6.8455	0.0000
10	ENSMUSG00000110701	Gm6013	predicted gene 6013	6.8150	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
47081	ENSMUSG00000018604	Tbx3	T-box 3	-3.5200	0.0000
47080	ENSMUSG00000020785	Camkk1	calcium/calmodulin-dependent protein kinase kinase 1, alpha	-3.5199	0.0000
47079	ENSMUSG00000037605	Adgrl3	adhesion G protein-coupled receptor L3	-3.5195	0.0000
47078	ENSMUSG00000109712	Gm8667	predicted gene 8667	-3.5192	0.0469
47077	ENSMUSG00000072244	Trim6	tripartite motif-containing 6	-3.5192	0.0469
47076	ENSMUSG00000111873	Gm39463	predicted gene, 39463	-3.5186	0.0000
47075	ENSMUSG00000066235	Pomgnt2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	-3.5186	0.0000
47074	ENSMUSG00000018379	Srsf1	serine and arginine-rich splicing factor 1	-3.5183	0.1526
47073	ENSMUSG00000022865	Cxadr	coxsackie virus and adenovirus receptor	-3.5173	0.0000
47072	ENSMUSG00000028345	Tex10	testis expressed gene 10	-3.5172	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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