SHOGoiN Cell Methylome: GSM1147606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147606


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M23Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000022683 Pla2g10 phospholipase A2, group X 7.4512 0.0000
2 ENSMUSG00000086550 Pla2g10os phospholipase A2, group X, opposite strand 7.4512 0.0000
3 ENSMUSG00000088236 Gm25425 predicted gene, 25425 7.2288 0.0000
4 ENSMUSG00000024220 Zfp523 zinc finger protein 523 7.2185 0.0000
5 ENSMUSG00000044312 Neurog3 neurogenin 3 7.2082 0.0000
6 ENSMUSG00000082341 Gm14143 predicted gene 14143 7.1799 0.0000
7 ENSMUSG00000029608 Rph3a rabphilin 3A 6.9396 0.0000
8 ENSMUSG00000025221 Kcnip2 Kv channel-interacting protein 2 6.9069 0.0000
9 ENSMUSG00000057945 Gm17136 predicted gene 17136 6.8455 0.0000
10 ENSMUSG00000110701 Gm6013 predicted gene 6013 6.8150 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
50854 ENSMUSG00000098292 Gm27194 predicted gene 27194 -5.9982 0.0000
50853 ENSMUSG00000096083 Gm10428 predicted gene 10428 -5.9982 0.0000
50852 ENSMUSG00000084020 Wsb2-ps WD repeat and SOCS box-containing 2, pseudogene -5.9982 0.0000
50851 ENSMUSG00000026384 Ptpn4 protein tyrosine phosphatase, non-receptor type 4 -5.9969 0.0000
50850 ENSMUSG00000035126 Wdr78 WD repeat domain 78 -5.9919 0.0000
50849 ENSMUSG00000039967 Zfp292 zinc finger protein 292 -5.9913 0.0000
50848 ENSMUSG00000093074 Gm25949 predicted gene, 25949 -5.9880 0.0000
50847 ENSMUSG00000089373 Gm22138 predicted gene, 22138 -5.9880 0.0000
50846 ENSMUSG00000075229 Ccdc58 coiled-coil domain containing 58 -5.9851 0.0000
50845 ENSMUSG00000109468 Gm45185 predicted gene 45185 -5.9819 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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