SHOGoiN Cell Methylome: GSM1147606
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM1147606 Profile download | 7010000000000000000000-769 | Sequence Read Archive | SRP023116 | SRP023116_M23 | Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing | Methylome | Female pronucleus (Zygote) | Mouse | Early embryonic tissue | Bisulfite-Seq (RRBS) | HiSeq 2000 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSMUSG00000022683 | Pla2g10 | phospholipase A2, group X | 7.4512 | 0.0000 |
| 2 | ENSMUSG00000086550 | Pla2g10os | phospholipase A2, group X, opposite strand | 7.4512 | 0.0000 |
| 3 | ENSMUSG00000088236 | Gm25425 | predicted gene, 25425 | 7.2288 | 0.0000 |
| 4 | ENSMUSG00000024220 | Zfp523 | zinc finger protein 523 | 7.2185 | 0.0000 |
| 5 | ENSMUSG00000044312 | Neurog3 | neurogenin 3 | 7.2082 | 0.0000 |
| 6 | ENSMUSG00000082341 | Gm14143 | predicted gene 14143 | 7.1799 | 0.0000 |
| 7 | ENSMUSG00000029608 | Rph3a | rabphilin 3A | 6.9396 | 0.0000 |
| 8 | ENSMUSG00000025221 | Kcnip2 | Kv channel-interacting protein 2 | 6.9069 | 0.0000 |
| 9 | ENSMUSG00000057945 | Gm17136 | predicted gene 17136 | 6.8455 | 0.0000 |
| 10 | ENSMUSG00000110701 | Gm6013 | predicted gene 6013 | 6.8150 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 50854 | ENSMUSG00000098292 | Gm27194 | predicted gene 27194 | -5.9982 | 0.0000 |
| 50853 | ENSMUSG00000096083 | Gm10428 | predicted gene 10428 | -5.9982 | 0.0000 |
| 50852 | ENSMUSG00000084020 | Wsb2-ps | WD repeat and SOCS box-containing 2, pseudogene | -5.9982 | 0.0000 |
| 50851 | ENSMUSG00000026384 | Ptpn4 | protein tyrosine phosphatase, non-receptor type 4 | -5.9969 | 0.0000 |
| 50850 | ENSMUSG00000035126 | Wdr78 | WD repeat domain 78 | -5.9919 | 0.0000 |
| 50849 | ENSMUSG00000039967 | Zfp292 | zinc finger protein 292 | -5.9913 | 0.0000 |
| 50848 | ENSMUSG00000093074 | Gm25949 | predicted gene, 25949 | -5.9880 | 0.0000 |
| 50847 | ENSMUSG00000089373 | Gm22138 | predicted gene, 22138 | -5.9880 | 0.0000 |
| 50846 | ENSMUSG00000075229 | Ccdc58 | coiled-coil domain containing 58 | -5.9851 | 0.0000 |
| 50845 | ENSMUSG00000109468 | Gm45185 | predicted gene 45185 | -5.9819 | 0.0000 |
