Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM1147606
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147606
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M23
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Female pronucleus (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000022683
Pla2g10
phospholipase A2, group X
7.4512
0.0000
2
ENSMUSG00000086550
Pla2g10os
phospholipase A2, group X, opposite strand
7.4512
0.0000
3
ENSMUSG00000088236
Gm25425
predicted gene, 25425
7.2288
0.0000
4
ENSMUSG00000024220
Zfp523
zinc finger protein 523
7.2185
0.0000
5
ENSMUSG00000044312
Neurog3
neurogenin 3
7.2082
0.0000
6
ENSMUSG00000082341
Gm14143
predicted gene 14143
7.1799
0.0000
7
ENSMUSG00000029608
Rph3a
rabphilin 3A
6.9396
0.0000
8
ENSMUSG00000025221
Kcnip2
Kv channel-interacting protein 2
6.9069
0.0000
9
ENSMUSG00000057945
Gm17136
predicted gene 17136
6.8455
0.0000
10
ENSMUSG00000110701
Gm6013
predicted gene 6013
6.8150
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000018604
Tbx3
T-box 3
-3.5200
0.0000
47080
ENSMUSG00000020785
Camkk1
calcium/calmodulin-dependent protein kinase kinase 1, alpha
-3.5199
0.0000
47079
ENSMUSG00000037605
Adgrl3
adhesion G protein-coupled receptor L3
-3.5195
0.0000
47078
ENSMUSG00000109712
Gm8667
predicted gene 8667
-3.5192
0.0469
47077
ENSMUSG00000072244
Trim6
tripartite motif-containing 6
-3.5192
0.0469
47076
ENSMUSG00000111873
Gm39463
predicted gene, 39463
-3.5186
0.0000
47075
ENSMUSG00000066235
Pomgnt2
protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
-3.5186
0.0000
47074
ENSMUSG00000018379
Srsf1
serine and arginine-rich splicing factor 1
-3.5183
0.1526
47073
ENSMUSG00000022865
Cxadr
coxsackie virus and adenovirus receptor
-3.5173
0.0000
47072
ENSMUSG00000028345
Tex10
testis expressed gene 10
-3.5172
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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