Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147606


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7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M23Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeFemale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000022683 Pla2g10 phospholipase A2, group X 7.4512 0.0000
2 ENSMUSG00000086550 Pla2g10os phospholipase A2, group X, opposite strand 7.4512 0.0000
3 ENSMUSG00000088236 Gm25425 predicted gene, 25425 7.2288 0.0000
4 ENSMUSG00000024220 Zfp523 zinc finger protein 523 7.2185 0.0000
5 ENSMUSG00000044312 Neurog3 neurogenin 3 7.2082 0.0000
6 ENSMUSG00000082341 Gm14143 predicted gene 14143 7.1799 0.0000
7 ENSMUSG00000029608 Rph3a rabphilin 3A 6.9396 0.0000
8 ENSMUSG00000025221 Kcnip2 Kv channel-interacting protein 2 6.9069 0.0000
9 ENSMUSG00000057945 Gm17136 predicted gene 17136 6.8455 0.0000
10 ENSMUSG00000110701 Gm6013 predicted gene 6013 6.8150 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000018604 Tbx3 T-box 3 -3.5200 0.0000
47080 ENSMUSG00000020785 Camkk1 calcium/calmodulin-dependent protein kinase kinase 1, alpha -3.5199 0.0000
47079 ENSMUSG00000037605 Adgrl3 adhesion G protein-coupled receptor L3 -3.5195 0.0000
47078 ENSMUSG00000109712 Gm8667 predicted gene 8667 -3.5192 0.0469
47077 ENSMUSG00000072244 Trim6 tripartite motif-containing 6 -3.5192 0.0469
47076 ENSMUSG00000111873 Gm39463 predicted gene, 39463 -3.5186 0.0000
47075 ENSMUSG00000066235 Pomgnt2 protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2 -3.5186 0.0000
47074 ENSMUSG00000018379 Srsf1 serine and arginine-rich splicing factor 1 -3.5183 0.1526
47073 ENSMUSG00000022865 Cxadr coxsackie virus and adenovirus receptor -3.5173 0.0000
47072 ENSMUSG00000028345 Tex10 testis expressed gene 10 -3.5172 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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