Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM1147607
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1147607
Profile download
7010000000000000000000-769
Sequence Read Archive
SRP023116
SRP023116_M24
Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencing
Methylome
Male pronucleus (Zygote)
Mouse
Early embryonic tissue
Bisulfite-Seq (RRBS)
HiSeq 2000
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSMUSG00000092751
Mir3080
microRNA 3080
8.7640
0.0000
2
ENSMUSG00000104967
Gm43436
predicted gene 43436
8.2036
0.0000
3
ENSMUSG00000045267
Tas2r119
taste receptor, type 2, member 119
8.0768
0.0000
4
ENSMUSG00000094202
Mup-ps26
major urinary protein, pseudogene 26
8.0112
0.0000
5
ENSMUSG00000091336
Gm17157
predicted gene 17157
7.8138
0.0000
6
ENSMUSG00000022831
Hcls1
hematopoietic cell specific Lyn substrate 1
7.7437
0.0000
7
ENSMUSG00000024777
Ppp2r5b
protein phosphatase 2, regulatory subunit B', beta
7.7415
0.0000
8
ENSMUSG00000038608
Dock10
dedicator of cytokinesis 10
7.7142
0.0000
9
ENSMUSG00000103192
Gm37645
predicted gene, 37645
7.7142
0.0000
10
ENSMUSG00000089916
Gm16160
predicted gene 16160
7.7074
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
47081
ENSMUSG00000034918
Cdhr2
cadherin-related family member 2
-4.6266
0.0170
47080
ENSMUSG00000022842
Ece2
endothelin converting enzyme 2
-4.6263
0.0000
47079
ENSMUSG00000028121
Bcar3
breast cancer anti-estrogen resistance 3
-4.6257
0.0000
47078
ENSMUSG00000036528
Ppfibp2
PTPRF interacting protein, binding protein 2 (liprin beta 2)
-4.6248
0.0000
47077
ENSMUSG00000030802
Bckdk
branched chain ketoacid dehydrogenase kinase
-4.6245
0.0000
47076
ENSMUSG00000105744
Gm43141
predicted gene 43141
-4.6244
0.0000
47075
ENSMUSG00000035472
Slc25a21
solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21
-4.6234
0.0000
47073
ENSMUSG00000020048
Hsp90b1
heat shock protein 90, beta (Grp94), member 1
-4.6229
0.0000
47072
ENSMUSG00000051615
Rap2a
RAS related protein 2a
-4.6223
0.0000
10
ENSMUSG00000089916
Gm16160
predicted gene 16160
7.7074
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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