Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM1147607

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1147607


Profile download
7010000000000000000000-769Sequence Read ArchiveSRP023116SRP023116_M24Single cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed by reduced representation bisulfite sequencingMethylomeMale pronucleus (Zygote)MouseEarly embryonic tissueBisulfite-Seq (RRBS)HiSeq 2000Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSMUSG00000092751 Mir3080 microRNA 3080 8.7640 0.0000
2 ENSMUSG00000104967 Gm43436 predicted gene 43436 8.2036 0.0000
3 ENSMUSG00000045267 Tas2r119 taste receptor, type 2, member 119 8.0768 0.0000
4 ENSMUSG00000094202 Mup-ps26 major urinary protein, pseudogene 26 8.0112 0.0000
5 ENSMUSG00000091336 Gm17157 predicted gene 17157 7.8138 0.0000
6 ENSMUSG00000022831 Hcls1 hematopoietic cell specific Lyn substrate 1 7.7437 0.0000
7 ENSMUSG00000024777 Ppp2r5b protein phosphatase 2, regulatory subunit B', beta 7.7415 0.0000
8 ENSMUSG00000038608 Dock10 dedicator of cytokinesis 10 7.7142 0.0000
9 ENSMUSG00000103192 Gm37645 predicted gene, 37645 7.7142 0.0000
10 ENSMUSG00000089916 Gm16160 predicted gene 16160 7.7074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
47081 ENSMUSG00000034918 Cdhr2 cadherin-related family member 2 -4.6266 0.0170
47080 ENSMUSG00000022842 Ece2 endothelin converting enzyme 2 -4.6263 0.0000
47079 ENSMUSG00000028121 Bcar3 breast cancer anti-estrogen resistance 3 -4.6257 0.0000
47078 ENSMUSG00000036528 Ppfibp2 PTPRF interacting protein, binding protein 2 (liprin beta 2) -4.6248 0.0000
47077 ENSMUSG00000030802 Bckdk branched chain ketoacid dehydrogenase kinase -4.6245 0.0000
47076 ENSMUSG00000105744 Gm43141 predicted gene 43141 -4.6244 0.0000
47075 ENSMUSG00000035472 Slc25a21 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 -4.6234 0.0000
47073 ENSMUSG00000020048 Hsp90b1 heat shock protein 90, beta (Grp94), member 1 -4.6229 0.0000
47072 ENSMUSG00000051615 Rap2a RAS related protein 2a -4.6223 0.0000
10 ENSMUSG00000089916 Gm16160 predicted gene 16160 7.7074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...